BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2087.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DM...   596   e-172
gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DM...    70   2e-13

>gi|300311553|ref|YP_003775645.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  596 bits (1537), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/314 (94%), Positives = 306/314 (97%)

Query: 1   MSSAVLPHPRIAHSHKLGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF 60
           MSSAVL    IA +HKLGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF
Sbjct: 1   MSSAVLSQLPIARTHKLGILFLISGLWTLSLLDTAGKLLALAGYHVVMIAWMRYTINLFF 60

Query: 61  MAATLAPLYRRRHGRSILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAP 120
           MAATLAPLYRRRHGRSILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAP
Sbjct: 61  MAATLAPLYRRRHGRSILQSNRLGLQLGRGALLLGSTLIFFSVLKIVPLAEGTAMNFCAP 120

Query: 121 LIVLAISPWLLGERSYVSRWIAVLIGFSGMLIVIRPSGDIPPYGVALGLISALTQALLSI 180
           LIVLAISPWLLGERSY+SRWIAVL+GF+GMLIVIRPSGDIPPYGVALGLISALTQALLSI
Sbjct: 121 LIVLAISPWLLGERSYLSRWIAVLVGFTGMLIVIRPSGDIPPYGVALGLISALTQALLSI 180

Query: 181 LNRKASQADNPMVTLFYGALVGSVASTLMVPFFWTSHTPSMVELAILVSTGITSTIGHFL 240
           LNRKASQADNPMVTLFYGALVGSV STL+VPFFWTSHTP+MVELAILVSTGITSTIGHFL
Sbjct: 181 LNRKASQADNPMVTLFYGALVGSVVSTLLVPFFWTSHTPTMVELAILVSTGITSTIGHFL 240

Query: 241 QNTAYKHAEASVLTPFFYAQIISACGMGWLVFGQFPDSITVLGIAIICASGIGIAYIEHK 300
           QN+AY+HAEASVLTPFFYAQIISACGMGWLVFGQFPD +TVLGIAIICASGIGIAYIEHK
Sbjct: 241 QNSAYRHAEASVLTPFFYAQIISACGMGWLVFGQFPDRVTVLGIAIICASGIGIAYIEHK 300

Query: 301 RAHPLPPADPMELV 314
           RAHPLPPADPME V
Sbjct: 301 RAHPLPPADPMESV 314


>gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 25/242 (10%)

Query: 89  RGALLLGSTLIFFSVLKIVPLAEGTAMNFCAPL---IVLAISPWLLGERSYVSRW---IA 142
           RG + + S  ++F    ++P+A  T +N+ + +   ++L  + W  G + +   W     
Sbjct: 66  RGGVGVISLWLWFYSFSLLPVATATTLNYMSSIWIAVMLFAAAWWQGNKKF--EWGLAAT 123

Query: 143 VLIGFSGMLIVIRPSGDIPPY-GVALGLISALTQALLSILNRKASQADNPMV-TLFY--- 197
           V++ F G+ +++RPS D     G A+ L S +  AL+ +  RK      P    +FY   
Sbjct: 124 VVLSFIGVALLMRPSLDADQLLGGAISLFSGVLSALVYLQVRKLGLLGEPEYRVVFYFSL 183

Query: 198 ----GALVGSVASTLMVPFFWTSHTPSMVELAILVSTGITSTIGHFLQNTAYKHAEASVL 253
                 LVGSVA T  VP  W SH+     L I++  G+T+T+       AY+     V 
Sbjct: 184 TGVLAGLVGSVA-TGRVPL-WHSHSWQGAALVIMI--GLTATLAQIAMTRAYRLGNTLVT 239

Query: 254 TPFFYAQIISACGMGWLVFGQFPDSITVLGIAIICASGIGIAYIEHKR----AHPLPPAD 309
               Y  I+ +   G LV+   P  +  LG+ +I ASG+   Y  H+     A  LP  D
Sbjct: 240 ANLQYTGIVFSSLFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIAARNLPKVD 299

Query: 310 PM 311
           P+
Sbjct: 300 PI 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 896,666
Number of extensions: 32567
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)