BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2086.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 409 e-115 gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transpo... 194 7e-51 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 169 1e-43 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 143 1e-35 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 142 3e-35 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 409 bits (1051), Expect = e-115, Method: Compositional matrix adjust. Identities = 210/233 (90%), Positives = 221/233 (94%) Query: 1 MPASATASPAIIAAIEVLQLSKHVADVAAPSGRLTILSGIDFTVAAGTTVAIVGASGSGK 60 MP SATA A I AIEVLQLSKHVAD +AP+GRLTIL GIDFTVAAGTT+AIVGASGSGK Sbjct: 1 MPVSATAVAAAIPAIEVLQLSKHVADASAPAGRLTILDGIDFTVAAGTTLAIVGASGSGK 60 Query: 61 STLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENV 120 STLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENV Sbjct: 61 STLLGLLAGLDTPSEGSVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENV 120 Query: 121 MLPLELRGDSQARTKAEQMLGRVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFAD 180 MLPLELRGD++AR KA +MLGRVGLGSRLKH PKYLSGGEQQRVALARAFVTEPPLL AD Sbjct: 121 MLPLELRGDARAREKATEMLGRVGLGSRLKHSPKYLSGGEQQRVALARAFVTEPPLLLAD 180 Query: 181 EPTGSLDAATGESVIQLMFELNRERGSTLVLVTHDNGIAARCERTLTIAAGRL 233 EPTGSLDAATGE+VI+LMFELNRERGSTLVLVTHDN +AARC+RT+TIAAGRL Sbjct: 181 EPTGSLDAATGEAVIELMFELNRERGSTLVLVTHDNAMAARCQRTITIAAGRL 233 >gi|300312088|ref|YP_003776180.1| lipoprotein release ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 194 bits (492), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 103/198 (52%), Positives = 133/198 (67%), Gaps = 2/198 (1%) Query: 34 LTILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDEDGR 93 + +L +D V G VAIVGASGSGKSTLL LL GLDTPS G+V L G+D +L E R Sbjct: 28 VKVLGNVDIDVYHGEQVAIVGASGSGKSTLLHLLGGLDTPSSGTVSLLGKDFASLGESER 87 Query: 94 ALLRKRKLGFVFQSFQLLGHLNALENVMLPLELR--GDSQARTKAEQMLGRVGLGSRLKH 151 LR + LGFV+Q LL +AL+NV +PL +R + A+ +A +MLG+VGL R+ H Sbjct: 88 GALRNQSLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRADAQEQAREMLGKVGLAQRVTH 147 Query: 152 YPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGSTLVL 211 P LSGGE+QRVALARA VT P + ADEPTG+LD +T + +LM EL+R G+ V+ Sbjct: 148 VPGELSGGERQRVALARALVTHPACVLADEPTGNLDRSTADRTFELMIELSRTLGTAFVI 207 Query: 212 VTHDNGIAARCERTLTIA 229 VTHD +A RC R L ++ Sbjct: 208 VTHDIELAGRCGRVLRLS 225 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 169 bits (429), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 138/220 (62%), Gaps = 3/220 (1%) Query: 17 VLQLSKHVADVAAPSGRLTILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEG 76 +LQL D A ++T+L+ ++ + AG VAIVGASGSGKSTL+ +L LD PS G Sbjct: 5 LLQLRGLRRDFPAGDEKITVLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAG 64 Query: 77 SVRLDGEDIYALDEDGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRGDS--QART 134 S + G + LD D A LR+ GF+FQ + LL L+A NV +P G Q R Sbjct: 65 SYLVAGRETGKLDADELAQLRREHFGFIFQRYHLLSDLDATANVEVPSVYAGLEPLQRRQ 124 Query: 135 KAEQMLGRVGLGSRLKHYPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESV 194 +A ++L R+GL R H P LSGG+QQRV++ARA + ++ ADEPTG+LD+ +G+ V Sbjct: 125 RAGELLARLGLAERSHHKPGQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEV 184 Query: 195 IQLMFELNRERGSTLVLVTHDNGIAARCERTLTIAAGRLV 234 I+++ EL+ E G T+++VTHD +A+ +R + I G ++ Sbjct: 185 IKILKELHAE-GHTIIIVTHDMQVASHAQRIIEIKDGVII 223 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 122/206 (59%), Gaps = 4/206 (1%) Query: 31 SGRLTILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDE 90 +G + L ID +A G+ I+G SG+GKS+LL + L+ P+ G V +D D+ LDE Sbjct: 52 AGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVDLATLDE 111 Query: 91 DGRALLRKRKLGFVFQSFQLLGHLNALENVMLPLELRG--DSQARTKAEQMLGRVGLGSR 148 LR+R +G +FQ F LL +N+ LPL + G +Q + ++L VGL + Sbjct: 112 TQLVALRRR-IGMIFQHFNLLAAKTVFDNIALPLRVAGVPRAQITQRVHELLALVGLQDK 170 Query: 149 LKHYPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGST 208 YP+ LSGG++QRV +ARA + P +L DE T +LD T +S++QL+ ++NR+ G T Sbjct: 171 ADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDINRKLGIT 230 Query: 209 LVLVTHDNGIAAR-CERTLTIAAGRL 233 ++L+TH+ + +R L + GR+ Sbjct: 231 IILITHEMSVIREIADRVLVLEQGRV 256 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 142 bits (357), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/208 (37%), Positives = 126/208 (60%), Gaps = 8/208 (3%) Query: 32 GRLTILSGIDFTVAAGTTVAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYALDED 91 G + + +D ++ G I+G SG+GKSTL+ L L+ P+ G + LDG+D+ +L Sbjct: 12 GNVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDLTSLSA- 70 Query: 92 GRALLR--KRKLGFVFQSFQLLGHLNALENVMLPLELRGDSQAR--TKAEQMLGRVGLGS 147 A LR +R +G +FQ F LL + +N+ LPLEL G S+A K E +L VGL + Sbjct: 71 --AQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGKSKAEIAAKVEPLLELVGLTA 128 Query: 148 RLKHYPKYLSGGEQQRVALARAFVTEPPLLFADEPTGSLDAATGESVIQLMFELNRERGS 207 YP +SGG++QRV +ARA +P +L +DE T +LD T S+++L+ ++N+E G Sbjct: 129 LRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINKELGL 188 Query: 208 TLVLVTHDNGIAAR-CERTLTIAAGRLV 234 T+VL+TH + + C+R + AG+++ Sbjct: 189 TIVLITHQMEVIKQICDRVAVMEAGQVI 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 584,197 Number of extensions: 21671 Number of successful extensions: 346 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 139 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)