BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2081.p (377 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 587 e-169 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 246 3e-66 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 243 1e-65 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 229 2e-61 gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC trans... 229 4e-61 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 587 bits (1512), Expect = e-169, Method: Compositional matrix adjust. Identities = 297/352 (84%), Positives = 324/352 (92%), Gaps = 4/352 (1%) Query: 26 FLSVRAIEKRFGAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVA 85 FLSVR +EKRFG+FTALDRVSLEVR+GEMVCLLGPSGCGKTTLLRTIAGLERQD+G++ A Sbjct: 12 FLSVREVEKRFGSFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLHA 71 Query: 86 AGRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGLTGMKRQARQERVAAMLDMVGLA 145 GRDISQLPPQ+RDYGILFQSYALFPNLSVADNVAYGL M RQ ++ERV ML MVGL Sbjct: 72 DGRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLGRMSRQQKRERVTEMLSMVGLD 131 Query: 146 GSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFR 205 GSQ KYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFR Sbjct: 132 GSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQFR 191 Query: 206 ITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHANWLPFTR 265 ITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTP ++YRRPA+PFVADFIG ANWLPFTR Sbjct: 192 ITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQANWLPFTR 251 Query: 266 VSGSQVAVGTLRLEVQPEEAELASGRLFCRPEAVELFASPACANRFQARVVDRIYLGNRY 325 +SGSQVAVG L LE+QP+E++ ASGRLFCRPEAV+LF+ +CANRF ARVVDRIYLG+RY Sbjct: 252 LSGSQVAVGGLHLEIQPDESDRASGRLFCRPEAVQLFSDESCANRFLARVVDRIYLGDRY 311 Query: 326 RLALAADALPGQSLLADVSTEAHERIAALPANAGNADGLWVALPRQALQVFA 377 RLALAADALPGQ+LLADVS++AHER+A+L DGLWV LPRQ+LQVFA Sbjct: 312 RLALAADALPGQTLLADVSSQAHERVASLDTQ----DGLWVTLPRQSLQVFA 359 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 246 bits (627), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 133/282 (47%), Positives = 182/282 (64%), Gaps = 8/282 (2%) Query: 27 LSVRAIEKRFGAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVAA 86 + V I+KRFG+FTAL+ VSL GE+ LLGPSGCGKTTLLR IAGLE D+GQ++ Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 87 GRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGLTGMKRQAR------QERVAAMLD 140 G D S + R G +FQ YALF +++V +N+A+GL R R +E+V +L+ Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLE 122 Query: 141 MVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRL 200 +V L +YP QLSGGQ+QR+ALARALA P +LLLDEP ALDA+VR+ L+ +RRL Sbjct: 123 LVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 Query: 201 QKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHANW 260 + +T++ VTHDQEEA+ +AD++ +M G++EQ GTP VY PASPFV F+G+ N Sbjct: 183 HDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLGNVN- 241 Query: 261 LPFTRVSGSQVAVGTLRLEV-QPEEAELASGRLFCRPEAVEL 301 L R+ + G R E + A+G F RP +++ Sbjct: 242 LFHGRLHEGVLDAGGARFEAPGHDNIRDAAGVGFVRPHDLDV 283 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 243 bits (621), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/320 (44%), Positives = 203/320 (63%), Gaps = 8/320 (2%) Query: 21 ETEQRFLSVRAIE--KRFGAFT-ALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLER 77 ++ Q +S+R + K F T AL + L++ GE + LLGPSGCGKTT LR IAGLE Sbjct: 2 KSHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEF 61 Query: 78 QD-AGQIVAAGRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGLTGMKRQA--RQER 134 D G+++ D++ LP + R G++FQ+YALFPN+SV +N+AYG+ K A R ER Sbjct: 62 PDEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAER 121 Query: 135 VAAMLDMVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQ 194 V +L+MV L G + QLSGGQ+QRVALARALA P +LLLDEPL+ALDA++RE ++ Sbjct: 122 VERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVR 181 Query: 195 LEIRRLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADF 254 ++ +L + IT + VTHDQ EAM + DRI VM+ G+I Q GTP E+Y PA+ FVA+F Sbjct: 182 SDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEF 241 Query: 255 IGHANWLPFTRVSGSQVAVGTLRLEVQPEEAELASGRLFCRPEAVELF-ASPACANRFQA 313 IG N + V+G ++ + T L + P+ + RPE VE+ + A A+ + Sbjct: 242 IGAMNRVDGI-VAGDRLQLPTGTLPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCLRG 300 Query: 314 RVVDRIYLGNRYRLALAADA 333 ++++ +LG+R R + A Sbjct: 301 KLINTFFLGDRTRFEIEIGA 320 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 229 bits (585), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/289 (44%), Positives = 180/289 (62%), Gaps = 15/289 (5%) Query: 27 LSVRAIEKRFGAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQIVAA 86 +S++ + K +G A+ + EV+ G+ LLGPSGCGK+T LR IAGL++ +G I Sbjct: 4 ISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIG 63 Query: 87 GRDISQLPPQSRDYGILFQSYALFPNLSVADNVAYGLTGMK--RQARQERVAAMLDMVGL 144 GRD++QLPP R ++FQSYALFP+LSV DN+ +G+ K R + R+ + D++GL Sbjct: 64 GRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGL 123 Query: 145 AGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQKQF 204 A + P QLSGGQQQRVAL RA+ + L+DEPLS LDAQ+R+ ++ EIR LQ+Q Sbjct: 124 AHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQL 183 Query: 205 RITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGH--ANWLP 262 +T + VTHDQ EAM MAD++ +++ GRIEQ PA++Y +PA+ F A FIG N LP Sbjct: 184 NMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMNLLP 243 Query: 263 FT------RVSGSQVAVGTL-----RLEVQPEEAELASGRLFCRPEAVE 300 +SGS V + L +L ++PE LA P VE Sbjct: 244 LEPHAEGLVISGSDVILRDLGQTPWQLGLRPEHIRLADASDSSVPAVVE 292 >gi|300312610|ref|YP_003776702.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 434 Score = 229 bits (583), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 123/242 (50%), Positives = 164/242 (67%), Gaps = 6/242 (2%) Query: 26 FLSVRAIEKRF--GAFTALDRVSLEVRQGEMVCLLGPSGCGKTTLLRTIAGLERQDAGQI 83 FL V + R+ A+D VSL + GE+ L+GPSG GKT+LLR +AGLE AG I Sbjct: 23 FLEVEHLSIRYPRTPAPAVDAVSLRLAPGELGALIGPSGSGKTSLLRAVAGLEPAQAGLI 82 Query: 84 VAAGRDIS----QLPPQSRDYGILFQSYALFPNLSVADNVAYGLTGMKRQARQERVAAML 139 G+ + ++P + R G++FQ +ALFP+L+VADN+A+GL G ++ R VA ML Sbjct: 83 RLDGQLLEGGGVRVPAEQRRIGMVFQDFALFPHLNVADNIAFGLRGRDKRERSAIVAGML 142 Query: 140 DMVGLAGSQAKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRR 199 +VGL + AK+P QLSGGQQQR+ALARALAP P LLLLDEP S+LD ++RE L ++R Sbjct: 143 ALVGLPEAGAKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRD 202 Query: 200 LQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPAEVYRRPASPFVADFIGHAN 259 + K+ T LMVTHDQ EA +AD + VM+ G++EQ+ TP +Y RPA+ F ADFIGH Sbjct: 203 ILKRTHTTALMVTHDQMEAFAVADVVGVMRQGQLEQWDTPYALYHRPATRFAADFIGHGV 262 Query: 260 WL 261 L Sbjct: 263 LL 264 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,128,737 Number of extensions: 44927 Number of successful extensions: 553 Number of sequences better than 1.0e-08: 134 Number of HSP's gapped: 355 Number of HSP's successfully gapped: 152 Length of query: 377 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 290 Effective length of database: 1,207,925 Effective search space: 350298250 Effective search space used: 350298250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)