BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2080.p (580 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [... 927 0.0 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 72 2e-13 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 64 3e-11 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 59 1e-09 >gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/580 (87%), Positives = 538/580 (92%), Gaps = 2/580 (0%) Query: 1 MQSSLPATPPMAHDQPQTARQGAAVTGTDRSQWLLAAFKWLLLALLALGLVGPLWFILAQ 60 M +++ A P + T+ + A+V DRSQWL A KWLLL LLALGLVGPL FILAQ Sbjct: 1 MPATVSAPLPTLSAETSTSTRPASVP--DRSQWLPALLKWLLLMLLALGLVGPLLFILAQ 58 Query: 61 AFMKPEGGWAGIQPFVDLFSHINFLPLLGRSLWVSAVTAVVTVPLAYVFAYALQRTCIPC 120 A + P G WAG +PF LF++INFLP+LGRSLWVSA+TAVVTVPLAYVFAYALQRTCIP Sbjct: 59 AVLTPAGEWAGSRPFAQLFANINFLPMLGRSLWVSAMTAVVTVPLAYVFAYALQRTCIPG 118 Query: 121 KGLWRGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHAM 180 KGLWRGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHA+ Sbjct: 119 KGLWRGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSIYGFWGILLGEVFYTFPHAL 178 Query: 181 MILLSALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGLFGALCLVFTLTITDFGVPK 240 MILLSALSQADGRLYDAA AMGASRWRIFTTVTLPATRYG+FGALCLVFTLTITDFGVPK Sbjct: 179 MILLSALSQADGRLYDAAQAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGVPK 238 Query: 241 ITGGAYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFGLDGWLQRRQRASMSSRSE 300 ITGGAYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTF LD WLQRRQRASMSSRSE Sbjct: 239 ITGGAYSVLAVEAYKAVVGQQQFGRGALIGLLLLVPALLTFTLDAWLQRRQRASMSSRSE 298 Query: 301 AYVPRPDWRRDGVNLLAVVLIAAAILLMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGG 360 YVP+PDWRRDG NLLAV LIA+AIL+MIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGG Sbjct: 299 TYVPQPDWRRDGANLLAVALIASAILMMIVVAMGASLVKLWPYNLQLTLQHYDFDNMDGG 358 Query: 361 GWLAYWNSLRLACGTSVVGTIVIFSGAWLMEKTRGQAWLAPILRMLSFLPMAVPGLVLGL 420 GWLAYWNSLRLACGTSV GT++IF GAWLMEKTRGQAWL+ +LRML FLPMAVPGLVLGL Sbjct: 359 GWLAYWNSLRLACGTSVAGTLLIFCGAWLMEKTRGQAWLSTLLRMLCFLPMAVPGLVLGL 418 Query: 421 GSLLFFNHPANPFHFLYGTMTLLVLCCIVHFYTTAHLTAVTALKQLDPEFEAASLSLKVP 480 GSLLFFNHPANPF+FLYGTMTLLVLCC+VHFYTTA LTAVTALKQLDPEFEAASLSLKVP Sbjct: 419 GSLLFFNHPANPFNFLYGTMTLLVLCCVVHFYTTAQLTAVTALKQLDPEFEAASLSLKVP 478 Query: 481 LLKTFLRVTVPLCLPQMLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVG 540 LLKTF+RVTVPLCLPQ+LEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVG Sbjct: 479 LLKTFIRVTVPLCLPQLLEIFRYLFVSSMTTVSAVIFLYRPDTVLASVAVLNMDDAGDVG 538 Query: 541 PAAAMSTLILLTSAAASLLMYAAGSRWLARAQAWRRGRSH 580 PAAAMSTLILLTSAAASLLM+ G RWLARAQAWRRGR+H Sbjct: 539 PAAAMSTLILLTSAAASLLMHLGGRRWLARAQAWRRGRAH 578 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/279 (23%), Positives = 115/279 (41%), Gaps = 26/279 (9%) Query: 3 SSLPATPPMAHDQPQTARQGAAVTGTDRSQWLLAAFKWLLLALLALGLVGPLWFI-LAQA 61 S+ PA PP + + R G V WL A+ L L W + +A+ Sbjct: 8 SARPARPPASRPR----RAGNQV--------------WLCFAVPGLTLFCAFWLLPMARL 49 Query: 62 FMKPEGGWAGIQPFVDLFSHINFLPLLGRSLWVSAVTAVVTVPLAYVFAYALQRTCIPCK 121 G G ++ + ++ ++ L +L +SA T+ ++ LQR P + Sbjct: 50 VGVGASGPDGAMAYLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQ 109 Query: 122 GLWRGIGLLPLLAPSLLPGIALIYLFGNQGLFKEWMDGSI-------YGFWGILLGEVFY 174 L + PL P ++ G +I L G QGL +G Y G+ LG +++ Sbjct: 110 ALLLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALTNGLFGESLVFAYSLAGLFLGYLYF 169 Query: 175 TFPHAMMILLSALSQADGRLYDAAHAMGASRWRIFTTVTLPATRYGLFGALCLVFTLTIT 234 + P ++ +++A + D L +AA ++GA W++ V LPA L + + F ++ Sbjct: 170 SIPRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVG 229 Query: 235 DFGVPKITGGAYSVLAVEAYKAVVGQQQFGRGALIGLLL 273 FG VL + Y G F A + ++L Sbjct: 230 AFGTAFTLAANIDVLPMTIYNEFTGYANFATAASLSIVL 268 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 8/156 (5%) Query: 97 VTAVVTVPLAYVF----AYALQRTCIPCKGLWRGIGLLPLLAPSLLPGIALIYLFGNQGL 152 +TA + VPL VF A+A+ + K L + LP ++ G+ + LFG QG Sbjct: 84 ITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSPVISGLIYVLLFGLQGY 143 Query: 153 FKEWMDGS----IYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYDAAHAMGASRWRI 208 W+ ++ GI+L +F TFP L+ + +AA +GAS WR Sbjct: 144 LGPWLREHDIKILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALVLGASGWRT 203 Query: 209 FTTVTLPATRYGLFGALCLVFTLTITDFGVPKITGG 244 F VTLP ++GL + L + +FG + G Sbjct: 204 FWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSG 239 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 9/185 (4%) Query: 81 HINFLPLLGRSLWVSAVTAVVTVPLAYVFAYALQRTCIPCKGLWRGIGLLPLLAPSLLPG 140 H + PLL SL V+ + ++ + L AY L R + + LPL+ P + G Sbjct: 2 HPVWTPLL-LSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLG 60 Query: 141 IALIYLFGNQGLFKEWMDGS----IYGFWGILLGEVFYTFPHAMMILLSALSQADGRLYD 196 L+ LFG +G W++ ++ + G +L FP + +A D ++ D Sbjct: 61 YYLLVLFGRRGALGAWLERMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMED 120 Query: 197 AAHAMGASRWRIFTTVTLPATRYGLFGALCLVFTLTITDFGVPKITGGAY----SVLAVE 252 AA +G S +F V+LP G+ + L F + +FG + G L+V Sbjct: 121 AARVLGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVA 180 Query: 253 AYKAV 257 Y+AV Sbjct: 181 IYEAV 185 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.140 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,535,961 Number of extensions: 52455 Number of successful extensions: 330 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 12 Length of query: 580 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 490 Effective length of database: 1,193,720 Effective search space: 584922800 Effective search space used: 584922800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)