BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2074.p
         (454 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311540|ref|YP_003775632.1| hypothetical protein Hsero_2225...   799   0.0  

>gi|300311540|ref|YP_003775632.1| hypothetical protein Hsero_2225
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/454 (89%), Positives = 427/454 (94%), Gaps = 3/454 (0%)

Query: 1   MTHDQQRSVRTIRIGAGAGYSGDRIEPAAELAEKGQLDYLIFECLAERTIAIGQQARLAD 60
           MTHD QR VR   IGAGAGYSGDRIEPAAELAE+G+LDYLIFECLAERTIAIGQQARLAD
Sbjct: 1   MTHDPQRKVR---IGAGAGYSGDRIEPAAELAERGELDYLIFECLAERTIAIGQQARLAD 57

Query: 61  PSKGYDPLLAERMHAVLKTCAHQGVRIITNMGAANPLAAAQRIREIARELGLAGLKVAAV 120
           P+KGYDPLLAERMHAVLKTCA +GVRIITNMGAANP AAAQR+REIAR LGLA LKVAAV
Sbjct: 58  PTKGYDPLLAERMHAVLKTCADKGVRIITNMGAANPAAAAQRVREIARTLGLAHLKVAAV 117

Query: 121 IGDDVLQAVQEGDFRIEDNGQPVASLGDRLISANAYLGSAPIVEALQAGAQVIVTGRVAD 180
            GDDVLQAVQEGDFRIEDNGQPV+SLG+RLISANAYLG API+EALQAGA VI+TGRVAD
Sbjct: 118 TGDDVLQAVQEGDFRIEDNGQPVSSLGERLISANAYLGVAPILEALQAGADVIITGRVAD 177

Query: 181 PALVLAPLVHEFGWAMDDWDKLGQGTLIGHLLECAGQITGGYFADPGKKDVAALARLGFP 240
           PALVLAPLVHEFGWA DDWDKLGQGTL+GHLLECAGQITGGYFADPGKKDVA LARLGFP
Sbjct: 178 PALVLAPLVHEFGWAADDWDKLGQGTLVGHLLECAGQITGGYFADPGKKDVAGLARLGFP 237

Query: 241 IGEVRADGSAVITKVAGSGGQVTAQTCKEQLLYEIHDPSAYLTPDVIADFSQVQITELGA 300
           IGEV ADGSAVITKVAGSGGQVTAQTCKEQLLYEIHDPSAY TPDV+ADFSQVQITE+G 
Sbjct: 238 IGEVSADGSAVITKVAGSGGQVTAQTCKEQLLYEIHDPSAYYTPDVVADFSQVQITEIGP 297

Query: 301 DRVAVTGARGRARPATLKTTLGYRDSFIGEGQMSYAGPGAQARAQLAADIVRERLALTGV 360
           DRVAV+G RGRARPATLKTTLGYRDSFIGEGQ+SYAGPGAQARAQLAA+IVRERLALTGV
Sbjct: 298 DRVAVSGGRGRARPATLKTTLGYRDSFIGEGQISYAGPGAQARAQLAAEIVRERLALTGV 357

Query: 361 ETQELRFDLIGVNAIGGPPKPAAAPEPNEVRLRVTGRTASMKQALRIGNEVETLYTNGPA 420
           ET ELR DLIG+NAI GP   A APEP EVRLRV+GRTASM+QA+RIGNEVETLYTNGPA
Sbjct: 358 ETDELRLDLIGMNAIAGPQMSAGAPEPYEVRLRVSGRTASMQQAVRIGNEVETLYTNGPA 417

Query: 421 GGGGATKSAREVIAVLSLLLPRTLVHTSVHIEEA 454
           GGGGATKSAREVIAVLSLLLPR+LVH SVHIEEA
Sbjct: 418 GGGGATKSAREVIAVLSLLLPRSLVHPSVHIEEA 451


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,391,550
Number of extensions: 58602
Number of successful extensions: 274
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,203,190
Effective search space: 440367540
Effective search space used: 440367540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)