BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2072.p
         (403 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide formy...   789   0.0  
gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole ca...   103   3e-23

>gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide
           formyltransferase 2 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 403

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/403 (96%), Positives = 395/403 (98%)

Query: 1   MKKPTRLGTPLSPSATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYENAPGQQVAHRAH 60
           MKKPTRLGTPLS SATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYENAPG QVAHRAH
Sbjct: 1   MKKPTRLGTPLSSSATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAH 60

Query: 61  VINMTDGAALTALIEQEQPDLIVPEIEAIATETLVKLEEAGRARVIPTARAAWLTMNREG 120
           VINMTDGAAL ALIEQE+PDLIVPEIEAIATETLVKLEEAG ARVIPTARAAWLTMNREG
Sbjct: 61  VINMTDGAALAALIEQEKPDLIVPEIEAIATETLVKLEEAGLARVIPTARAAWLTMNREG 120

Query: 121 IRRLAGETLGLATSPYRFADSLAELKAAIDQIGFPCVIKPVMSSSGKGQSKIDGADEIEA 180
           IRRLAGETLGLATSPYRFADSL ELKAAIDQIG+PCVIKPVMSSSGKGQSKIDG DEIE+
Sbjct: 121 IRRLAGETLGLATSPYRFADSLEELKAAIDQIGYPCVIKPVMSSSGKGQSKIDGPDEIES 180

Query: 181 AWNYAAAGGRVDSGRVIVEGFIDFDYEITLLTVRSLNENGDTITSFCDPIGHVQVKGDYV 240
           AWNYAAAGGRVD+GRVIVEGFIDFDYEITLLTVRSLNENGDT+TSFCDPIGHVQVKGDYV
Sbjct: 181 AWNYAAAGGRVDAGRVIVEGFIDFDYEITLLTVRSLNENGDTVTSFCDPIGHVQVKGDYV 240

Query: 241 ESWQPHPMPNAALEKARDIARKVTENLGGLGLFGVELFVKGDMVWFSEVSPRPHDTGMVT 300
           ESWQPHPMP AALEKARDIARKVTENLGGLGLFGVELFVKGDMVWFSEVSPRPHDTGMVT
Sbjct: 241 ESWQPHPMPGAALEKARDIARKVTENLGGLGLFGVELFVKGDMVWFSEVSPRPHDTGMVT 300

Query: 301 MVSQVQSEFELHAKAILGLPVNTALKTPGASAVIYGQHEARGIAFDGVADALRIPGADIR 360
           MVSQVQSEFELHAKAILGLPVNTAL+TPGASAVIYGQHEARGIAFDGVA+ALRIPGA+IR
Sbjct: 301 MVSQVQSEFELHAKAILGLPVNTALRTPGASAVIYGQHEARGIAFDGVAEALRIPGAEIR 360

Query: 361 LFGKPESFARRRMGVALASGDNVETARIRAKQAAAKVKPVIPE 403
           LFGKPESFARRRMGVALAS DNVETARIRAKQAAAKVKPVIPE
Sbjct: 361 LFGKPESFARRRMGVALASADNVETARIRAKQAAAKVKPVIPE 403


>gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole
           carboxylase ATPase subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 401

 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 185/411 (45%), Gaps = 40/411 (9%)

Query: 3   KPTRLGTPLSPSATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYENAPGQQVAHRAHVI 62
            P R   P +  AT + ++G G+LG+    A Q +G +V  ++   + P  QVA R    
Sbjct: 7   SPLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADRLINA 66

Query: 63  NMTDGAALTALIEQEQPDLIVPEIEAIATETLVKLEEAGRARVIPTARAAWLTMNREGIR 122
              DG AL  L        I  E E ++ ++L  L  A +  V P A    +  +R   +
Sbjct: 67  GYDDGPALAEL--GALCAAITTEFENVSAKSLATL--AAQTFVAPAASGVSIAQDRTAEK 122

Query: 123 RL---AGETLGLATSPYRFADSLAELKAAIDQIGFPCVIKPV-MSSSGKGQSKIDGADEI 178
                 G   G+  +P+   +S A+++  +D    P ++K   M   GKGQ ++   +E+
Sbjct: 123 AFFTECGSQSGVLPAPHLVINSEADIE-GLDANLLPGILKTARMGYDGKGQVRVRSVEEV 181

Query: 179 EAAWNYAAAGGRVDSGRVIVEGFIDFDYEITLLTVRSLNENGDTITSFCDPIGHVQVKGD 238
            AA  +A+ GG       ++E  +   YE+++L  R    +G  +     PI    V  D
Sbjct: 182 RAA--FASMGGVT----CVLEKMLPLAYEVSVLVAR--GHDGQAVVY---PIAE-NVHRD 229

Query: 239 YVESWQPHPMPNAALEKARDIARKVTENLGGL---GLFGVELFVKGD-MVWFSEVSPRPH 294
            +      P PN   + A    +   + +G L   G+  +E FV  D  +  +E++PRPH
Sbjct: 230 GILFTTTVPGPNIKADAAARAQQAALQIIGALQYVGVLCIEFFVLEDGALVVNEMAPRPH 289

Query: 295 DTGMVTMVSQVQSEFELHAKAILGLPV-NTALKTPGASAVIYGQHEARGIAFDGVADALR 353
           ++G  T+ + V S+FE  A+A+  LP+ +T   +P     I G      + ++G  D  R
Sbjct: 290 NSGHYTIDACVTSQFEQQARAMARLPLGDTRQHSPSVMLNILGD-----VWYEGDTDTQR 344

Query: 354 ---------IPGADIRLFGKPESFARRRMGVALASGDNVETARIRAKQAAA 395
                    +PGA + L+GK E+   R+MG    +G  +  A+ +   A A
Sbjct: 345 EPAWDQVLALPGAHVHLYGKAEARRGRKMGHVTFTGATLADAQQQLTAACA 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,294,337
Number of extensions: 54641
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 2
Length of query: 403
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,207,925
Effective search space: 381704300
Effective search space used: 381704300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)