BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2071.p (534 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspiri... 1056 0.0 gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavopr... 244 1e-65 >gi|300311535|ref|YP_003775627.1| L-aspartate oxidase [Herbaspirillum seropedicae SmR1] Length = 534 Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/533 (96%), Positives = 522/533 (97%) Query: 1 MKCDVAILGSGLAGLSVALHLAEKYQVVVVSKGELLDGASNWAQGGIAAVLDSSDSHAQH 60 MKCDVAILGSGLAGLSVALHLAEKYQVVVVSKGELLDGASNWAQGGIAAVLDS DSHAQH Sbjct: 1 MKCDVAILGSGLAGLSVALHLAEKYQVVVVSKGELLDGASNWAQGGIAAVLDSHDSHAQH 60 Query: 61 IDDTLVAGAGLCDESATRTIVEHGRQAIEWLIAQGVPFTRDDSAELGYHLTREGGHSQRR 120 I DTLVAGAGLCDESATRTIVE GR+AIEWLI QGVPFTRDDSAELGYHLTREGGHSQRR Sbjct: 61 IADTLVAGAGLCDESATRTIVEQGREAIEWLIEQGVPFTRDDSAELGYHLTREGGHSQRR 120 Query: 121 IIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDLIHARKLDPKAEPRCLGVHVQDTA 180 IIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDLIHARKLD KAEPRCLGVHVQDTA Sbjct: 121 IIHAADATGHAVQVTLEQRVRAHPNITLLEHHCAIDLIHARKLDAKAEPRCLGVHVQDTA 180 Query: 181 SGRVIAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCL 240 SG+V+AIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCL Sbjct: 181 SGKVLAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEFIQFHPTCL 240 Query: 241 YHPYAKSFLISEALRGEGALLKLPASAGAAAGQRFMPEHDERCELAPRDIVARAIDFEMK 300 YHPYAKSFLISEALRGEGALLKLP SAGAAAGQRFMPEHDER ELAPRD+VARAIDFEMK Sbjct: 241 YHPYAKSFLISEALRGEGALLKLPLSAGAAAGQRFMPEHDERAELAPRDVVARAIDFEMK 300 Query: 301 KRGLDHVDLDISHQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVTDMA 360 KRGLDHVDLDISHQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVTDMA Sbjct: 301 KRGLDHVDLDISHQSPAFIAEHFPTIQARCLEFGIDITRQPIPVVPAAHYTCGGVVTDMA 360 Query: 361 GRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRSAAADIEQELAAGTWRVTEVPQ 420 GRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGR+AAADIE ELAAG+WRV EVP Sbjct: 361 GRTDLPGLYAVGETAYTGLHGANRLASNSLLECLVLGRAAAADIEHELAAGSWRVDEVPA 420 Query: 421 WDESRVSDADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANF 480 WDESRV+DADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANF Sbjct: 421 WDESRVTDADEEVVIAHNWDELRRFMWNYVSIVRTDKRLERAQHRIRLLKEEIDEYYANF 480 Query: 481 RISRDLLELRNLVDVAQLIVSSALTRKESRGLHFSQDYPRTLPRATPTILPGR 533 RISRDLLELRNLVDVAQLIVSSAL RKESRGLHFSQDYPRTLPRATPTILPGR Sbjct: 481 RISRDLLELRNLVDVAQLIVSSALMRKESRGLHFSQDYPRTLPRATPTILPGR 533 >gi|300312277|ref|YP_003776369.1| succinate dehydrogenase flavoprotein subunit [Herbaspirillum seropedicae SmR1] Length = 592 Score = 244 bits (623), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 191/560 (34%), Positives = 283/560 (50%), Gaps = 65/560 (11%) Query: 2 KCDVAILGSGLAGLSVALHLAEK-YQVVVVSKGELLDGASNWAQGGIAAVLD--SSDSHA 58 + D I+G+G +G+ +L LAE V V+SK + AQGGI A L S D+ Sbjct: 12 RFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWY 71 Query: 59 QHIDDTLVAGAGLCDESATRTIVEHGRQAIEWLIAQGVPFTRDDSAEL-----GYHLTRE 113 H+ DT+ L D+ A + +A+ L G+PF R+ + G H Sbjct: 72 WHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGHTANL 131 Query: 114 GGHSQRRIIHAADATGHAVQVTLEQR-VRAHPNITLLEHHCAIDLIHARKLDPKAEPRCL 172 G +R AAD TGHA+ TL QR VRA + + A+DLI + D L Sbjct: 132 GEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFV--EWMALDLIRNEEGD------VL 183 Query: 173 GVHVQDTASGRVIAIAAARTVLATGGAGKVYLYTSNPDSATGDGIAMAWRAGCRVANMEF 232 GV + +G ++ + A T+ ATGGAG+++ ++N TGDG+ MA RAG + +MEF Sbjct: 184 GVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEF 243 Query: 233 IQFHPTCLYHPYAKSFLISEALRGEGALLKLPASAGAAAGQRFMPEHDERC-ELAPRDIV 291 QFHPT + LI+E +RGEG +L + G+RFM + +LAPRD V Sbjct: 244 WQFHPTGV---AGAGVLITEGVRGEGGILI------NSNGERFMERYAPTLKDLAPRDFV 294 Query: 292 ARAIDFEMKK-RGL----DHVDLDISHQSPAFIAEHFPTIQARCLEF-GIDITRQPIPVV 345 +R++D E+K+ RG+ DHV LD+ H I + P+I +F +D T++PIPVV Sbjct: 295 SRSMDQEIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVV 354 Query: 346 PAAHYTCGGVVTDMAGRTDLP----------GLYAVGETAYTGLHGANRLASNSLLECLV 395 P HY GG+ T++ G+ P G+YA+GE A +HGANRL +NSLL+ +V Sbjct: 355 PTIHYQMGGIPTNIHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVV 414 Query: 396 LGRSAAADI---------EQELAAGTW--RVTEVPQWDESRVSDADEEVVIAHNWDELRR 444 GR+A I + + AG + + + S S+ ++V +++R Sbjct: 415 FGRAAGNHIVGSRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVA-----NDIRA 469 Query: 445 FMWNYVSIVRTDKRLERAQHRIRLLKE-----EIDEYYANFRISR-DLLELRNLVDVAQL 498 M Y + RTD L+ +I L E + F +R + LEL NL++ A+ Sbjct: 470 TMQKYCGVFRTDALLQEGYTKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKA 529 Query: 499 IVSSALTRKESRGLHFSQDY 518 ++SA RKESRG H DY Sbjct: 530 TITSAAARKESRGAHAHSDY 549 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,716,456 Number of extensions: 75233 Number of successful extensions: 263 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 2 Length of query: 534 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 444 Effective length of database: 1,193,720 Effective search space: 530011680 Effective search space used: 530011680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)