BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2067.p (532 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 1087 0.0 gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 305 5e-84 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 245 6e-66 gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 239 4e-64 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 83 4e-17 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 1087 bits (2811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/532 (98%), Positives = 527/532 (99%) Query: 1 VLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 +LSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 Query: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE Sbjct: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 Query: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD Sbjct: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 Query: 181 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY Sbjct: 181 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 Query: 241 MLASSQARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPS 300 MLASSQARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPS Sbjct: 241 MLASSQARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPS 300 Query: 301 SRVNPFVRFEGEKKLHRLAVETQSITKTYDRDIFKNFSIMVEAGEKIAIIGANGAGKTTL 360 SRVNPF+RFEGEKKLHRLAVETQ ITKTYDRDIFKNFSIMVEAGEKIAIIGANGAGKTTL Sbjct: 301 SRVNPFIRFEGEKKLHRLAVETQGITKTYDRDIFKNFSIMVEAGEKIAIIGANGAGKTTL 360 Query: 361 LRSIGGDVAGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDDDQAV 420 LRSIGGDV GLHPD G VKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDDDQAV Sbjct: 361 LRSIGGDVTGLHPDGGLVKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDDDQAV 420 Query: 421 RGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLN 480 RGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLN Sbjct: 421 RGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLN 480 Query: 481 IALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGSYEDYLASQGIE 532 IALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQG YEDYLASQGIE Sbjct: 481 IALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGGYEDYLASQGIE 532 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 305 bits (782), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 183/536 (34%), Positives = 284/536 (52%), Gaps = 28/536 (5%) Query: 6 NITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDVNER 65 +++Q G KPL EN+ + G++ GLIGANG GKS+ +L G+L GN+ R Sbjct: 6 QVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDFPARWR 65 Query: 66 LGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLEAKFAE 125 + + Q+ A + ++ + G + +E A PD D A+L A+ Sbjct: 66 MAYVAQETPALDR-PAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGN-HIAELHTALAD 123 Query: 126 YDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNN 185 D YT +RA +LLLG+G +EQ P+++ + GW++R+ LAQAL D+LLLDEPTN+ Sbjct: 124 ADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNH 183 Query: 186 LDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASS 245 LD++ I WLE+ L T++IISHDR FL+ V + +D LK Y GNY + Sbjct: 184 LDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAF----E 239 Query: 246 QARAQQLAANA----KAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIK-------- 293 + R+ QL A K + + A LQ F+ RF A +KARQA SR K + K++ Sbjct: 240 RQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAA 299 Query: 294 ----VEDIKPSSRVNPFVRFEGEKKLHRLAVETQSITKTYDRDIFKNFSIMVEAGEKIAI 349 E +P S NP + E + +E ++ D+ I ++ G++I + Sbjct: 300 AEFSFEFREPLSAPNPLLVMEKVNAGYH--IEGKNGAPDEDKIIVHGIDFSLQNGQRIGL 357 Query: 350 IGANGAGKTTLLRSIGGDVAGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMGK 409 +G NGAGK+TL++++ G++ P SG + + +GY Q E E+ W Sbjct: 358 LGVNGAGKSTLIKTVAGEI---DPLSGTARLGKGLVIGYFAQHQVEMLRHDESPL-WHLT 413 Query: 410 WTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTN 469 +Q +R LG F+G S+ SGGEK R+ ++ R N+LL+DEPTN Sbjct: 414 RLAPDVREQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTN 473 Query: 470 HMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGSYEDY 525 H+D+E+ E+L +AL ++ GTL+ VSHDR + + + L V +G++ F G +DY Sbjct: 474 HLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDY 529 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 245 bits (626), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 166/535 (31%), Positives = 285/535 (53%), Gaps = 21/535 (3%) Query: 1 VLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 V+S ++ + FG L ++ G R GLIG NG GKS+ +KI+ G + G + + Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYM--KAAD 118 N ++ + Q+ EEM V D V G E+ A ++E +AI +DD + + Sbjct: 63 QQNLKIAYVDQEPHFPEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDDALLERMHQ 122 Query: 119 LEAKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILL 178 ++ D ++ + L + + + G +S G K RV LA L NPD+LL Sbjct: 123 IQTVLDAADAWSIGNKVETTLDKLNLNRDARIGELSG---GMKKRVALACGLVGNPDVLL 179 Query: 179 LDEPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYD 238 LDEPTN+LD +I WLE +L + +++ I+HDR FL+ V T + ++D G + +PGN+ Sbjct: 180 LDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGNFT 239 Query: 239 DYMLASSQARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIK 298 Y ++ A + NAK + +A+ + ++R+ +++ + R ++++ ++V+ + Sbjct: 240 TYQTRKAELLANEEVENAKFDKFLAQEEVWIRK--GVQARRTRDEGRVRRLEALRVQRSE 297 Query: 299 PSSRVNPFVRFE---GEKKLHRLAVETQSITKTY-DRDIFKNFSIMVEAGEKIAIIGANG 354 R V+ E GE+ ++ E +++ K Y + I ++FS ++ G+K+ +IG NG Sbjct: 298 RRERQGQ-VKLEVGTGERS-GKIVAELENVNKAYGPKTIVRDFSTILMRGDKVGLIGQNG 355 Query: 355 AGKTTLLRSIGGDVAGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMGK---WT 411 AGKTTLL+ I G+ A PDSG VK V Y Q + TL D + W Sbjct: 356 AGKTTLLKLILGEEA---PDSGTVKQGTKMQVAYFDQ-MRAQLNEETTLADTIAPGSDWV 411 Query: 412 QEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHM 471 + + V L LF+ + + V+ LSGGE+ R++ +L NVL++DEPTN + Sbjct: 412 EVNGQRKHVMTYLSDFLFAPERARSPVRTLSGGERNRLLLARLFAKPANVLVLDEPTNDL 471 Query: 472 DMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVK-DGQVIDFQGSYEDY 525 D++++E L LE+Y GT+ VSHDR F+ ++ T+++ + +G ++ G Y D+ Sbjct: 472 DIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQVIASEGNGVWREYVGGYSDW 526 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 239 bits (610), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 182/549 (33%), Positives = 281/549 (51%), Gaps = 66/549 (12%) Query: 14 KPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDVNERLGKLRQDQ 73 + + ++IS+ F G + G++G NG GKST +KI+ G + G N +G L Q+ Sbjct: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQEP 78 Query: 74 FAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDY----MKAADLEAKFAEYDGY 129 E V V E++ A ++ DA+YA D D+ + A LEA A DG Sbjct: 79 QLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADGN 138 Query: 130 TA----EARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNN 185 + E A L L P + G +S G K RV L + L S PD+LLLDEPTN+ Sbjct: 139 SLNQQLEMAADALRL---PPWDAKIGVLSG---GEKRRVALCKLLLSKPDMLLLDEPTNH 192 Query: 186 LDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASS 245 LD ++ WLE+ L T++ I+HDR+FL+ + ++D G + GNY + L Sbjct: 193 LDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSW-LEQK 251 Query: 246 QARAQQLAANAKAKEK-VAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSRVN 304 +AR +Q A+ A++K +A+ ++VR+ K RQA S+A+ +R N Sbjct: 252 EARLKQEEASESARQKTIAKELEWVRQ----NPKGRQAKSKARL------------ARFN 295 Query: 305 PFVRFEGEKK-------------LHRLAVETQSITKTY-DRDIFKNFSIMVEAGEKIAII 350 +E +K+ L +E ++++K Y DR + + + + AG + II Sbjct: 296 ELSEYEYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGII 355 Query: 351 GANGAGKTTLLRSIGGDVAGLHPDSGEVKWAENANVGYMPQDPT---------EEFAGGE 401 G NGAGK+TL R + G PDSGEV V + Q E+ +GG Sbjct: 356 GPNGAGKSTLFRMLAGRET---PDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGGA 412 Query: 402 TLTDWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNV 461 + +G++ + R LGR F G D +K V LSGGE+GR+ K +L NV Sbjct: 413 DILT-VGRF------EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNV 465 Query: 462 LLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVK-DGQVIDFQG 520 LL+DEP+N +D+E++ +L AL ++AGT++ +SHDR F+ +AT I+ + D QV F G Sbjct: 466 LLLDEPSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDG 525 Query: 521 SYEDYLASQ 529 +Y++Y A + Sbjct: 526 NYQEYEADK 534 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 121/545 (22%), Positives = 226/545 (41%), Gaps = 101/545 (18%) Query: 16 LFENISVKFGDGNRYGLIGANGCGKSTF-MKILG---GDLEPSAGNVSLDVNERLGKLRQ 71 + +N++ G LIG +G GK+T + +LG + G V R+G+ + Sbjct: 48 IVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQV------RIGERQI 101 Query: 72 DQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLEAKFAEYDGYTA 131 DQ + + + M GH A +++ A NP T D + + L+ D +A Sbjct: 102 DQMDEKAL----LAMRGH--HVAYIAQSAAAAFNPARTLMDQVIESALQ--HGVMDKASA 153 Query: 132 EARAGELLLGVGVPIEQHNGPM--SNVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189 +A EL + +P G V+ G RV+ A AL + P++++LDEPT LD+ Sbjct: 154 MRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPTTALDVT 213 Query: 190 T----IRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASS 245 T +R + V+ E +T + +SHD + Q+ + + G ++ G+ + A + Sbjct: 214 TQIEVLRAFKNVVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVR-ETGSTSQVLHAPA 272 Query: 246 QARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSRVNP 305 + Q L A A +V +L++ + +++A P R++ Sbjct: 273 DSYTQCLLAAASPAARVVQLREILPATLPAEARA-------------------PLLRISG 313 Query: 306 FVRFEGEKKLHRLAVETQSITKTYDRDIFKNFSIMVEAGEKIAIIGANGAGKTTLLRSIG 365 V G RL + I + ++ ++ G + IIG +G+GKTTL R++ Sbjct: 314 LVAGYGAPD--RLGLPGVR--------ILDDINLTIQRGSTVGIIGESGSGKTTLARAVA 363 Query: 366 GDVAGLHPDSGEVKW-----------------------AENANVGYMPQDPTEEFAGGET 402 G +A P G ++ +NA+ P + G Sbjct: 364 GMIA---PARGSIQLDGETLSPTLEGRTREQFRRVQIVFQNADTALNP-----SHSIGRI 415 Query: 403 LTDWMGKWTQEGDDDQAVRGILGRLL----FSGDDVKKSVKVLSGGEKGRMMYGKLMLGR 458 L + + G +A+R LL + + LSGG+K R+ + + + Sbjct: 416 LNRPLSFY--HGLKGEAMRRRTAELLDLVQLPATVIDRLPAELSGGQKQRVNLARALAAK 473 Query: 459 HNVLLMDEPTNHMD-------MESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVK 511 +++L DE T+ +D +E + L L+ + +F+SHD V ++ I+ + Sbjct: 474 PDLILCDEVTSALDTVVAAAILELLAELRRELQV---SYMFISHDISTVRAICDDIVVLY 530 Query: 512 DGQVI 516 G+++ Sbjct: 531 AGRMV 535 Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 28/212 (13%) Query: 332 DIFKNFSIMVEAGEKIAIIGANGAGKTTL-LRSIGGDVAGLHPDSGEVKWAENA------ 384 +I KN + V GE +A+IG +G+GKTT+ L +G AG H G+V+ E Sbjct: 47 EIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGCHIAGGQVRIGERQIDQMDE 106 Query: 385 ---------NVGYMPQDPTEEFAGGETLTDW-MGKWTQEGDDDQAVRGILGRLLFSGDDV 434 +V Y+ Q F TL D + Q G D+A LF + Sbjct: 107 KALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGVMDKASAMRKAVELFRALAL 166 Query: 435 KKSVKV-------LSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMD----MESIESLNIAL 483 K+ +SGG+ R+M ++ ++++DEPT +D +E + + + Sbjct: 167 PNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPTTALDVTTQIEVLRAFKNVV 226 Query: 484 EKYAGTLIFVSHDREFVSSLATRILEVKDGQV 515 ++ T ++VSHD V+ +A RI+ ++DG V Sbjct: 227 KELGTTAVYVSHDLAVVAQMADRIIVLRDGAV 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,609,133 Number of extensions: 68349 Number of successful extensions: 902 Number of sequences better than 1.0e-08: 52 Number of HSP's gapped: 893 Number of HSP's successfully gapped: 58 Length of query: 532 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 442 Effective length of database: 1,193,720 Effective search space: 527624240 Effective search space used: 527624240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)