BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2060.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311523|ref|YP_003775615.1| cupin superfamily protein [Herb...   218   1e-58

>gi|300311523|ref|YP_003775615.1| cupin superfamily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 134

 Score =  218 bits (554), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 110/114 (96%)

Query: 3   AITQFRLGAPTPEYDHPREERRLEGNPLRTTWNHFTSASGEMNAGIWACEKGSWRIAFAP 62
           AITQFRL +PTPE+DHPREERRL+GNPLRTTWNHFTSASGE++AGIWACE+GSWRIAFA 
Sbjct: 6   AITQFRLSSPTPEFDHPREERRLDGNPLRTTWNHFTSASGEVSAGIWACERGSWRIAFAQ 65

Query: 63  NKDEYFCVLEGRCRVIDEQGNAAEAGPGDALVIPAGFKGVFEVLEPVRKHYVIV 116
           NKDEYF VLEGRCRVIDEQG+AAEAGPGDA+VIPAGFKGVFEV+E +RKHYVIV
Sbjct: 66  NKDEYFYVLEGRCRVIDEQGHAAEAGPGDAMVIPAGFKGVFEVVEALRKHYVIV 119


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 442,154
Number of extensions: 18000
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)