BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2054.p (528 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 562 e-161 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 192 8e-50 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 186 4e-48 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 162 6e-41 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 562 bits (1448), Expect = e-161, Method: Compositional matrix adjust. Identities = 334/528 (63%), Positives = 395/528 (74%), Gaps = 4/528 (0%) Query: 1 MISSDPAKLSRIIGLMCEAIALRGAQQPAPALAALDQALALDPAFLPLHMQRADLLLEMN 60 M S DPA L+R++GLMC+AIALRGAQQ ALAALDQALALDP+FLPL+MQRADLL EM Sbjct: 1 MNSPDPATLARLMGLMCDAIALRGAQQAEAALAALDQALALDPSFLPLYMQRADLLQEMG 60 Query: 61 DLADAVAAYEACLALAPDYEEARLAHRAVLAQWAASLQAELAAEHQGDPQRAITLAQVCY 120 L +A+AA ACL LAPDY+EAR HR++L +WA + + A E I LA+ Sbjct: 61 ALPEAIAACAACLDLAPDYDEARALHRSLLQRWATQCELQTADEGASGSAALIDLARARL 120 Query: 121 KLDQPQQALAAIEAVLPLTR--LEHQVLHANILLRLNRHEAALHCYSGSATDETTRALVA 178 +LDQP ALAA+E L + L LHA+ILLRLNRHE AL CY +A ++ RAL A Sbjct: 121 QLDQPLPALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHA 180 Query: 179 FNRADILRRMGRIDEAQAGYEEALRCHADFPEAQVGRAHMLLTRQDYAQGWLAHEARFEM 238 FN ADILRRMGRI++AQA +E+ALR H DFPEA+VGRAHMLL++Q YA+GW AHEARF + Sbjct: 181 FNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGI 240 Query: 239 ADLARLGMASPSTRPRWQPGEDVGGKHVLLWCEQGQGDSLQFVRYLPWVAQHAAAVTLCA 298 A+LAR G+ SP RPRW+ GE V GK VLLW EQGQGD+LQF RY+P VAQ AA V+LCA Sbjct: 241 AELARRGIDSP--RPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCA 298 Query: 299 PASLLPLLVPSLPQVRCVSSVEEAGPHDCQASLLSLPLLLDLPDPSQGPQPPYLYADPGR 358 PASLL +L P LPQVRC+++ EA HD ASLLSLPLLL LPDP QGP PYL A P R Sbjct: 299 PASLLAVLAPCLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQR 358 Query: 359 VQQWQTRLAQQGSTVPRRPRIGLVWAGRQYGAIHHSRDVPLAALLPLLDLPAQFVSLQVE 418 VQQWQ L+ +PRRPR+G+ WAGRQY +HHSRD+PL AL PL LPA FVSLQVE Sbjct: 359 VQQWQAYLSALWPAMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPLWTLPADFVSLQVE 418 Query: 419 IPLADQALYESLGGRLPTLPLTDWADTAALACGLDLVISVDTAVAHLAGALGLPCFLLQR 478 +P DQA + +L RL T L DWADTAAL C LDLVISVDTAV HLAGALG+PC L R Sbjct: 419 VPAGDQAAHATLAQRLHTPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLR 478 Query: 479 LEGEWRWGVQGAHSPWYPSLRLLRQQVRGDWSHVVQALVAACYERFSQ 526 +GEWRWGV+G+ +PWYPSL+LLRQ+ RG W VV+ ++A C +R Q Sbjct: 479 YDGEWRWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEMLAVCTQRLLQ 526 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 192 bits (487), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 166/531 (31%), Positives = 227/531 (42%), Gaps = 54/531 (10%) Query: 12 IIGLMCEAIALRGAQQPAPALAALDQALALDPAFLPLHMQRADLLLEMNDLADAVAAYEA 71 + L+ ALR + ALA L++A AL P QR ++L + DA +YE Sbjct: 110 VEALLARGAALRRLGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYER 169 Query: 72 CLALAPDYEEARLAHRAVLAQWAASLQAELAAEHQGDPQRAITLAQVCYKLDQPQQALAA 131 +AL PD+ EA W L C +Q QAL A Sbjct: 170 AVALRPDFIEA----------W-------------------FNLGNTCKDGNQLDQALRA 200 Query: 132 IEAVLPL--TRLEHQVLHANILLRLNRHEAALHCYSGSATDETTRALVAFNRADILRRMG 189 + L + E +L ++ R AL Y + + + FNR L ++ Sbjct: 201 YDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFNRGSTLEQLY 260 Query: 190 RIDEAQAGYEEALRCHADFPEAQVGRAHMLLTRQDYAQGWLAHEARFEMADLARLGMASP 249 R +EA Y A D A A M L + D+ GW E R+ + G Sbjct: 261 RFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMR--GQQRQ 318 Query: 250 STRPRWQPGEDVGGKHVLLWCEQGQGDSLQFVRYLPWVAQHAAAVTLCAPASLLPLLVPS 309 +P W + + GK +LL EQG GD+LQFVRY P +A A V L +L L Sbjct: 319 FMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLA-G 377 Query: 310 LPQVRCVSSVEEAG--PHDCQASLLSLPLLLDLPDPSQGPQPPYLYADPGRVQQWQTRLA 367 LP V V + P D L+SLPL + P+ PYL + W RL Sbjct: 378 LPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAPYLLPEASSWAAWHQRLP 437 Query: 368 QQGSTVPRRPRIGLVWAGRQYGA------IHHSRDVPLAALLPLLDLPAQ-----FVSLQ 416 + R R+GLVWAG I R +P A L PL++L + F SLQ Sbjct: 438 RN-----RALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELAREHAALEFYSLQ 492 Query: 417 VEIPLADQALYESLGG--RLPTLPLTDWADTAALACGLDLVISVDTAVAHLAGALGLPCF 474 V Q L R + L D+A+T AL LDL+I+VDT+V HLAGALG P + Sbjct: 493 VGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVW 552 Query: 475 LLQRLEGEWRWGVQGAHSPWYPSLRLLRQQVRGDWSHVVQALVAACYERFS 525 LL R G WRW V+ SPWY + + Q+ G W V+ + AA ++ + Sbjct: 553 LLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQQLA 603 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 186 bits (472), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 164/533 (30%), Positives = 241/533 (45%), Gaps = 39/533 (7%) Query: 13 IGLMCEAIALRGAQQPAPALAALDQALALDP-AFLPL-HMQRADLLLEMNDLADAVAAYE 70 IGL A AL P ++A + A+ +P A PL H+ RA L+E +AVA Sbjct: 130 IGL---ANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRA--LIECKRYNEAVAVIL 184 Query: 71 ACLALAPDYEEARLAHRAVLAQWAASLQAELAAEHQG----DPQRAITLAQVC------Y 120 L L + + A A + E H+ DPQ ++ Sbjct: 185 KSLELQISFAPSHTALGEAFH--AMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLN 242 Query: 121 KLDQPQQALAAIEAVLPLTRLEHQVLHANILLRLNRHEAALHCYSGSATDETTRALVAFN 180 ++D+ + L + + P + L ++ +R + A+ ++ + ++ AL N Sbjct: 243 RIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNN 302 Query: 181 RADILRRMGRIDEAQAGYEEALRCHADFPEAQVGRAHMLLTRQDYAQGWLAHEARF---E 237 I G +++A + +AL ++P A+ A LL + +GW HE+R E Sbjct: 303 IGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLVTRE 362 Query: 238 MADLARLGMASPSTRPRWQPGEDVGGKHVLLWCEQGQGDSLQFVRYLPWVAQHAAAVTLC 297 + + RL P+W + GK++LL EQG GDS+QF+RY+ V A V L Sbjct: 363 RSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARVALH 422 Query: 298 APASLLPLLVPSLPQVRCVSSVEEAGPHDCQASLLSLPLLLDLPDPSQGPQPP--YLYAD 355 L L P+V V + P DC L+SLP + P P YL AD Sbjct: 423 VKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVPGGYLSAD 482 Query: 356 PGRVQQWQTRLAQQGSTVPRRPRIGLVWAGR-QYGAIHHSRDVPLAALLPLLDLPA-QFV 413 P W ++ +Q S P + R+G+VW G ++G H R + + L LP +F Sbjct: 483 PILKSSWGEKI-RQLSQSPEKLRVGVVWGGNPEHGNDRH-RSIAMDKFATLFQLPNIEFY 540 Query: 414 SLQVEIPLADQALYESLGGRLPTLPL----TDWADTAALACGLDLVISVDTAVAHLAGAL 469 SLQ PL +++L LP L D+ADTAA LDLV+SVDT+V HLAGAL Sbjct: 541 SLQKGKPLD---AFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAGAL 597 Query: 470 GLPCFLLQRLEGEWRWGVQGAHSPWYPSLRLLRQQVRGDWSHVV----QALVA 518 G P ++L +WRW SPWYP +RL RQ DW V+ Q LVA Sbjct: 598 GHPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVA 650 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 162 bits (410), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 154/430 (35%), Positives = 206/430 (47%), Gaps = 25/430 (5%) Query: 106 QGDPQRAITLAQVCYKLDQPQQALAAIEAVLPLTRLEHQVLHANILLRLNRH-----EAA 160 Q DP +A T + ++ +Q AA + + RL+ Q + L H E A Sbjct: 141 QRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLAAGLVEHAQGQFEEA 200 Query: 161 LHCYSGSATDETTRALVAFNRADILRRMGRIDEAQAGYEEALRCHADFPEAQVGRAHMLL 220 L Y + +R L R+ + +EA Y ALR +A + A LL Sbjct: 201 LRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSLL 260 Query: 221 TRQDYAQGWLAHEARFE--MADLARLGMASPSTRPRWQPGEDVGGKHVLLWCEQGQGDSL 278 Q W +E R+E AD R +T P W G + GK +LLW EQGQGD++ Sbjct: 261 VLGRLEQAWPLYEWRWEGRSADPYR-----HATIPAWNGGSSLAGKRILLWAEQGQGDTI 315 Query: 279 QFVRYLPWVAQHAAAVTLCAPASLLPLLVP-SLPQVRCVSSVEEAGPH-DCQASLLSLPL 336 QF RY+ + Q A V L PASLL L+ ++P + ++ E P D Q L+SLPL Sbjct: 316 QFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLPEVDFQLPLMSLPL 375 Query: 337 LLDLPDPSQGPQPPYLYADPGRVQQWQTRLAQQGSTVPRRPRIGLVWAGRQYG------A 390 + + PYL ADP R W+ RLA P R RIGLV +G + Sbjct: 376 VCNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARRS 435 Query: 391 IHHSRDVPLAALLPLLDLPAQFVSLQVEIPLADQALYESL-GGRLPTLPLTDWADTAALA 449 I SR PLA P LD F +Q ++ AD+ E G + D+ADTAA+ Sbjct: 436 IELSRFAPLALARPQLD----FFVIQPDLRQADRQWCEQQPGWHWVGAAINDFADTAAVL 491 Query: 450 CGLDLVISVDTAVAHLAGALGLPCFLLQRLEGEWRWGVQGAHSPWYPSLRLLRQQVRGDW 509 G+DLVISVDTA AHLAGA+ P ++ +WRW + A SPWYP+ RL RQQ G W Sbjct: 492 AGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAW 551 Query: 510 SHVVQALVAA 519 V+ L AA Sbjct: 552 DDVILTLRAA 561 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,462,093 Number of extensions: 57415 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 4 Length of query: 528 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 438 Effective length of database: 1,193,720 Effective search space: 522849360 Effective search space used: 522849360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)