BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2045.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase [He...   487   e-139
gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase [He...    82   3e-17

>gi|300311508|ref|YP_003775600.1| tRNA/rRNA methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  487 bits (1253), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 239/263 (90%), Positives = 252/263 (95%)

Query: 1   MKLITSKDNPVFKDLKQLATSSQARRRAGQSLLDGVHLAQAWLQHRGAPQVCVVAESAQY 60
           MKLITSKDNP+FK+LKQLA+SSQARRRAGQSLLDGVHLAQAWLQHRGAPQ+CVVAESAQY
Sbjct: 1   MKLITSKDNPLFKELKQLASSSQARRRAGQSLLDGVHLAQAWLQHRGAPQLCVVAESAQY 60

Query: 61  HPEVAPILAQCEALHAQCLVLADRLYDAISTVENGVGLLLLVTTPEPAAPTSLKESAVLL 120
           HPEVAPILAQCEAL AQCLVLAD+LYDA+STV+NGVGL LLV TP  +AP +L ESAVLL
Sbjct: 61  HPEVAPILAQCEALQAQCLVLADKLYDAVSTVDNGVGLFLLVATPVASAPKALTESAVLL 120

Query: 121 DGLQDPGNLGSILRSAAAAGVKQVFCSPGTAAAWSPKVLRAGMGAHFVLDIFENADLVAL 180
           DGLQDPGNLGSILRSAAAAGV+QVFCSPGT AAWSPKVLRAGMGAHFVLDI E+ADLVAL
Sbjct: 121 DGLQDPGNLGSILRSAAAAGVRQVFCSPGTVAAWSPKVLRAGMGAHFVLDIVEDADLVAL 180

Query: 181 CAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQDAATHEVVIPHLGEME 240
           CAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQ+AAT EVVIPHLG+ME
Sbjct: 181 CAASRIPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQEAATQEVVIPHLGQME 240

Query: 241 SLNVAAAAAVCLFEQLRQRTVGR 263
           SLNVAAAAAVCLFEQLRQRT GR
Sbjct: 241 SLNVAAAAAVCLFEQLRQRTAGR 263


>gi|300311188|ref|YP_003775280.1| tRNA/rRNA methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score = 82.4 bits (202), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 3/145 (2%)

Query: 118 VLLDGLQDPGNLGSILRSAAAAGVKQVFCSPGTAAAWSPKVLRAGMGAHFVLDIFENADL 177
           ++LDG+ DP NLG+ LR A  AG   V      A   +   ++   GA   +      +L
Sbjct: 98  LILDGITDPHNLGACLRVADGAGAHAVIAPKDRAVGLNATAMKVSSGASDTVPYITVTNL 157

Query: 178 VALCAASR---IPLLATSSHAAQTIYDCDLSGPVAWLLGHEGQGVSAALQDAATHEVVIP 234
                  +   + ++ TS  A + +Y+ D +GP A ++G EG+G+    ++     V IP
Sbjct: 158 ARTMRDLKERGVWIIGTSDDAEKGLYEGDFTGPTALVMGSEGEGMRRLTRETCDVLVNIP 217

Query: 235 HLGEMESLNVAAAAAVCLFEQLRQR 259
             G +ESLNV+ A+ VCL+E  RQR
Sbjct: 218 MFGSVESLNVSVASGVCLYEARRQR 242


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 869,847
Number of extensions: 36701
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)