BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2037.p
         (457 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311500|ref|YP_003775592.1| membrane-associated Zn-dependen...   814   0.0  

>gi|300311500|ref|YP_003775592.1| membrane-associated Zn-dependent
           proteases 1 protein [Herbaspirillum seropedicae SmR1]
          Length = 457

 Score =  814 bits (2102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/457 (87%), Positives = 428/457 (93%)

Query: 1   MNLLHTLIAFFVALGTLVVVHELGHYLVARWCGVKVLRFSVGMGRVIWSRRFGRDQTEWA 60
           M LLHTLIAFFVALGTLVVVHELGHYLVARWCGVKVLRFSVGMGRVIWSRRFGRDQTEWA
Sbjct: 1   MTLLHTLIAFFVALGTLVVVHELGHYLVARWCGVKVLRFSVGMGRVIWSRRFGRDQTEWA 60

Query: 61  ISVLPLGGYVKMLDAREQPLEDIPAADLKREFTRQSVWRRIAIVAAGPLANFLLAILLFA 120
           +S+LPLGGYVKMLDAREQ L+DI  ADLKREFTRQSVWRRIAIVAAGP+ANFLLAILLFA
Sbjct: 61  LSILPLGGYVKMLDAREQDLQDISEADLKREFTRQSVWRRIAIVAAGPIANFLLAILLFA 120

Query: 121 GLYMHGVPEPVPVLRGATEQSAAYQAGLRAGDRITAINGAPVQVWSEVRWKLMQLVLEKA 180
           GLYMHGVPEPVPVLR A  QS AYQ+GLRAGDRITAINGAPV VWSEVRWKLMQLVLEKA
Sbjct: 121 GLYMHGVPEPVPVLRAAATQSVAYQSGLRAGDRITAINGAPVHVWSEVRWKLMQLVLEKA 180

Query: 181 DARIDVERPNPAGNGKLLDTVTLRLGGIDGNELEGDFLAKLGLALARPPAILGQILDGPA 240
           DAR+DVERPNP G+GKLL+TV+L LG I  ++LEGDFLAKLGL+LARPPA+LG+I+DGPA
Sbjct: 181 DARLDVERPNPNGSGKLLNTVSLPLGSIAADDLEGDFLAKLGLSLARPPAVLGKIMDGPA 240

Query: 241 KAAGLQTGDRITAIDGVPVQDGLAFVEKIRESAGKPLVLQGLRGTMPLQVRITPDTVEEG 300
           K AGLQTGDRITAIDG PVQDGLAFVE +RES GKPL L+ +RG  P  VR+TP++V+E 
Sbjct: 241 KTAGLQTGDRITAIDGAPVQDGLAFVETVRESGGKPLTLEAVRGNAPFTVRVTPESVDEE 300

Query: 301 ESGKRIGRIKVEVPLAPEMATISDAPFTAVAKGAQRTWDTSVMTIKMIGKMIVGQVSLKN 360
            SGKRIGRIKVEVPLAPEMAT+SD  FTA+AKG +RTWDTSVM+IKMIGKM++GQVSLKN
Sbjct: 301 GSGKRIGRIKVEVPLAPEMATVSDDIFTALAKGVRRTWDTSVMSIKMIGKMVIGQVSLKN 360

Query: 361 ITGPITIADYAGQTARVGLVSYLSFLAFISISLGVMNLLPIPVLDGGHLLYYALEILTGR 420
           ITGPITIADYAGQTARVGLVSYLSFLAFISISLGVMNLLPIPVLDGGHLLYYALEILTGR
Sbjct: 361 ITGPITIADYAGQTARVGLVSYLSFLAFISISLGVMNLLPIPVLDGGHLLYYALEILTGR 420

Query: 421 PVSERFGEIAQRAGLGLLMALMLVAAFNDIVRLMFQG 457
           PVSERFGEIAQRAGLG+LMALMLVAAFNDIVRLMFQG
Sbjct: 421 PVSERFGEIAQRAGLGILMALMLVAAFNDIVRLMFQG 457


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,470,188
Number of extensions: 66053
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,203,190
Effective search space: 443977110
Effective search space used: 443977110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)