BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2036.p
         (390 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311499|ref|YP_003775591.1| 1-deoxy-D-xylulose 5-phosphate ...   696   0.0  

>gi|300311499|ref|YP_003775591.1| 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/390 (90%), Positives = 365/390 (93%)

Query: 1   MQSISILGATGSIGVSTLDVVARHPDRYRVFALSAHARVVELAEQCQRFRPQVAVVGSAQ 60
           MQSISILG+TGSIGVSTLDVVARHPDRYRV+ALSAH+RV ELA+QC +FRPQVAVVG+A 
Sbjct: 1   MQSISILGSTGSIGVSTLDVVARHPDRYRVYALSAHSRVAELAQQCAQFRPQVAVVGTAA 60

Query: 61  AASQLQTLLRAAGLSTEVTYGPQALCDVASADGCDMVMAAIVGAAGLASTLAAARAGKKI 120
           AA++LQ LL A  + TEV YGPQALCD+ASA+GCDMVMAAIVGAAGLASTLAAARAGKKI
Sbjct: 61  AAAELQFLLAARAIKTEVAYGPQALCDIASANGCDMVMAAIVGAAGLASTLAAARAGKKI 120

Query: 121 LLANKEALVISGQLLMDTVQAHGASLLPIDSEHNAIFQCLPAGYTRSMPAHGVEKILLTA 180
           LLANKEALVISGQLLMD V AHGASLLPIDSEHNAIFQCLP GYTRSM AHGVEKILLTA
Sbjct: 121 LLANKEALVISGQLLMDAVAAHGASLLPIDSEHNAIFQCLPPGYTRSMSAHGVEKILLTA 180

Query: 181 SGGPFLTRDVATFDQVTVEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAPADK 240
           SGGPFLTRDV T D VTVEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAPADK
Sbjct: 181 SGGPFLTRDVGTLDTVTVEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAPADK 240

Query: 241 IEVVIHPQSVIHSMVSYADGSVLAQLGNPDMRTPIANALAYPERIASGVAPLELAQIAQL 300
           IEVVIHPQSVIHSMVSYADGSVLAQLGNPDMRTPIANALAYPERIASGVAPL+LAQIAQL
Sbjct: 241 IEVVIHPQSVIHSMVSYADGSVLAQLGNPDMRTPIANALAYPERIASGVAPLDLAQIAQL 300

Query: 301 SFFPPDFTRFPCLKLAYDALRAGGTLAAILNAANEVAVQAFLDRRIGFGKIAPLIQEVMS 360
           SF  PDF RFPCLKLAYDALRAGGTLAAILNAANEVAVQAFL RRIGFGKIAPLI EVMS
Sbjct: 301 SFSEPDFQRFPCLKLAYDALRAGGTLAAILNAANEVAVQAFLGRRIGFGKIAPLIDEVMS 360

Query: 361 AIPNRQADDIAALLEQDRQARDHACTLISR 390
           AIPNRQADDI ALLEQDRQAR HA  LISR
Sbjct: 361 AIPNRQADDIDALLEQDRQARSHAEHLISR 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,104,442
Number of extensions: 41959
Number of successful extensions: 169
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,207,925
Effective search space: 366001275
Effective search space used: 366001275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)