BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2035.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransfer...   468   e-133
gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferas...    64   1e-11

>gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  468 bits (1204), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/275 (89%), Positives = 262/275 (95%)

Query: 1   MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAAVWT 60
           MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAA+WT
Sbjct: 1   MLKTRVITALILLAILLPILYFGYFPAFAMAALVFFAAGAWECFRLFKSPRPTLWAALWT 60

Query: 61  LVFSVILFFSGLPSVRSLYVLCVLLWALRFIPALGMGLPKVEAFGNRLLNGTYMLSILGC 120
           L F VILFF+G+PSVR LYVLCVLLWA+RF+PALG+GLP VE+F NRLLN TYMLSILGC
Sbjct: 61  LAFCVILFFTGMPSVRPLYVLCVLLWAVRFVPALGLGLPPVESFANRLLNATYMLSILGC 120

Query: 121 FVAIADLFRHSPVYLLSVMAVVWVADIGAYFSGKGFGRHKLAPSISPGKSWEGAIGGWLA 180
           FVAI DLF+ +P+YLLSVMAVVWVADIGAYFSGKGFGRHKLAP+ISPGKSWEGA+GGWLA
Sbjct: 121 FVAIVDLFQRAPLYLLSVMAVVWVADIGAYFSGKGFGRHKLAPTISPGKSWEGAVGGWLA 180

Query: 181 VLVMSAAVAMSMSGGETFQYHLYSHWGWGGFVGILTLMVVASVVGDLFESQLKRRAGMKD 240
           VLV+SAAVAMSM  GETFQYHLYS WGW GFVG+LT+MV ASVVGDLFESQLKRRAGMKD
Sbjct: 181 VLVISAAVAMSMGAGETFQYHLYSRWGWLGFVGVLTVMVAASVVGDLFESQLKRRAGMKD 240

Query: 241 SSNLLPGHGGVLDRIDALIPVLPLAALVDLWLAAA 275
           SSNLLPGHGGVLDRIDALIPVLPLAALVDLWLAAA
Sbjct: 241 SSNLLPGHGGVLDRIDALIPVLPLAALVDLWLAAA 275


>gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 12/114 (10%)

Query: 145 ADIGAYFSGKGFGRHKLAPSISPGKSWEGAIGGWLAVLVMSAAVAMSMSGGETFQYHLYS 204
           +D+  Y  GK FG+ KLAP ISP K+ EG +GG    ++ S AV  ++     F      
Sbjct: 195 SDVFQYVWGKLFGKRKLAPQISPSKTLEGLVGG----VLTSTAVGAALYWITPFNV---- 246

Query: 205 HWGWGGFVGILTLMVVASVVGDLFESQLKRRAGMKDSSNLLPGHGGVLDRIDAL 258
              W   +  LT+ ++    G    S +KR  G+KD   ++ GHGG+LDR+D++
Sbjct: 247 ---WQAALVALTINILG-FFGGFVLSAIKRDRGLKDWGAMIEGHGGMLDRVDSI 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 731,540
Number of extensions: 29539
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)