BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2024.p (732 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp... 1419 0.0 gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp... 507 e-144 >gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 732 Score = 1419 bits (3672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 709/732 (96%), Positives = 722/732 (98%) Query: 1 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIAGFPDRLTAWLPTLIEHRC 60 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTI GFPDRLT WLPTLIEHRC Sbjct: 1 MKNIEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIPGFPDRLTTWLPTLIEHRC 60 Query: 61 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE 120 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE Sbjct: 61 SYEERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHE 120 Query: 121 TVTRAALFAARDLVMAAIEDRPYDLDTTLRKLRRMVDRLCLGPSTACIVDAADERRIPTI 180 TVTRAAL+AARDLVMAAIEDRPYDLD TL KLRRMVDRLCLGPSTACIVDAADERRIPTI Sbjct: 121 TVTRAALYAARDLVMAAIEDRPYDLDATLSKLRRMVDRLCLGPSTACIVDAADERRIPTI 180 Query: 181 RLSEGNLVQLGHGCKSRRIWTAESDQTGAIAEGISRDKDLTKSLLQTCGVPVPEGRLVDS 240 RLSEGNLVQLGHGCKSRRIWTAESDQT AIAEGISRDKDLTKSLL+TCGVPVPEGRLV+S Sbjct: 181 RLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGISRDKDLTKSLLETCGVPVPEGRLVES 240 Query: 241 PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAFKVALEEGSGVLVERFIPG 300 PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETA+KVALEEGSGVLVERF+PG Sbjct: 241 PEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAYKVALEEGSGVLVERFVPG 300 Query: 301 LEHRLLIVGGKLAAAARGEPIFIVGDGQSTVQDLLDELNRDPRRGLLEEHLLDPVLLDRE 360 LEHRLLIVGGKLAAAARGEPIFIVGDG+STVQDLLDELNRDPRRGLLEEHLLDPVLL+RE Sbjct: 301 LEHRLLIVGGKLAAAARGEPIFIVGDGKSTVQDLLDELNRDPRRGLLEEHLLDPVLLERE 360 Query: 361 PAAALELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAVRIVGLDIA 420 PAA LELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLA RIVGLDIA Sbjct: 361 PAAVLELQRQNLTTESVPAAGRRILLLRNGNVSSDITDLVHPSVAAAASLAARIVGLDIA 420 Query: 421 GVDIVAEDISRPLQEQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI 480 GVDIVAEDISRPLQ+QGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI Sbjct: 421 GVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENGRI 480 Query: 481 PVVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRATWDAAHRVLL 540 P+VGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRA WDAAHRVLL Sbjct: 481 PIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANWDAAHRVLL 540 Query: 541 NRAVEAAVFENGSAAILSEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRTQV 600 NRAVEAAVFENGSAAIL+EGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRTQV Sbjct: 541 NRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRTQV 600 Query: 601 DLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELLASHLKDGGRAVFLRDGDLI 660 DLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASEL+ASHLK+GGRAVFLR GDLI Sbjct: 601 DLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELVASHLKEGGRAVFLRGGDLI 660 Query: 661 QAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGIGPEVIRAGIELFGTERA 720 QAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGI PEVIRAGIELFGTERA Sbjct: 661 QAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGISPEVIRAGIELFGTERA 720 Query: 721 EEQGLKFKSQAA 732 EEQGLKFK+QAA Sbjct: 721 EEQGLKFKNQAA 732 >gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1] Length = 857 Score = 507 bits (1306), Expect = e-144, Method: Compositional matrix adjust. Identities = 319/729 (43%), Positives = 433/729 (59%), Gaps = 25/729 (3%) Query: 4 IEFLRFLNLKGPNIWTYRSALEVWIDIGELEDFPSNTIAGFPDRLTAWLPTLIEHRCSYE 63 ++ R L+GPN+W+ +A+E + E E N + GF RL A P + E Sbjct: 1 MDVSRIRALRGPNLWSRHTAIEAIVSCPEDERVIDN-MPGFELRLRARFPQI----GFLE 55 Query: 64 ERGGFVRRLHEGTWPGHILEHVTLELQNLAGLPGGFGKARETNVRGVYKVVVRARHETVT 123 GG + H L L LQ+ AG P F + T G+Y+VVV E V Sbjct: 56 PDGG-----KQVVSLAHALAAAALGLQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVG 110 Query: 124 RAALFAARDLVMAAIEDRPYDLDTTLRKLRRMVDRLCLGPSTACIVDAADERRIPTIRLS 183 R A A +LV AA D P+DL TL ++R + + + LGPST IV+AA +R IP RL+ Sbjct: 111 RLAFDLALELVRAAQADAPFDLTATLTRIRELDEDVRLGPSTGSIVNAAIKRGIPFRRLT 170 Query: 184 EGNLVQLGHGCKSRRIWTAESDQTGAIAEGISRDKDLTKSLLQTCGVPVPEGRLVDSPED 243 +G++VQ G G + +RI AE+ T AIAE I++DKDLTK LL GVPVP GR+V++ ED Sbjct: 171 QGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVED 230 Query: 244 AWEAAQDIGLPVVVKPCDANHGRGVFIDLNTREEIETAFKVALEEGSGVLVERFIPGLEH 303 A +AA++IG VV+KP D N G+GV ++++T E+I AF A V+VER++PG + Sbjct: 231 ALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDF 290 Query: 304 RLLIVGGKLAAAARGEPIFIVGDGQSTVQDLLDELNRDPRRGLLEEHLLDPVLLDREPAA 363 RLL++G L AAAR +P ++GDG T++ L+D++N DP RG L + LD A Sbjct: 291 RLLVIGKTLVAAARRDPPQVIGDGVHTIRQLIDQVNADPLRGDGHATSLTKIRLD--DIA 348 Query: 364 ALELQRQNLTTESVPAAGRRILLLRNGNVS-----SDITDLVHPSVAAAASLAVRIVGLD 418 L QNL E++PA G R++L N N+S +D+TD VHP VAA A A ++VGLD Sbjct: 349 LSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLD 408 Query: 419 IAGVDIVAEDISRPLQEQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLFGPEENG 478 I GVD+V + L+EQGG IVEVNA PGL MHL PS GK R VGEAI+ ++ ++G Sbjct: 409 ICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMYEDGDDG 468 Query: 479 RIPVVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRATWDAAHRV 538 RIPVV V GT+GKTT RLI ++ +G VG+ +G+Y ++ + G+ + +A V Sbjct: 469 RIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNV 528 Query: 539 LLNRAVEAAVFENGSAAILSEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIATKVKRT 598 L + V+AAV E +L EGL +DRC V VV NI D L YI E +A VKR Sbjct: 529 LFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAV-VKRV 587 Query: 599 QVDLVLPDGAAVLNADDPLVADMAQLCDGEVIFFSTDPASELLASHLKDGGRAVFLRDGD 658 V+ V P G AVLNA DP+VA MA C G V FF+ DP ++A+H G R V+ RDGD Sbjct: 588 IVENVAPTGTAVLNAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVY-RDGD 646 Query: 659 LI---QAEGERQCKVSSVDAIPLTENGAVAYQVENVLAAVGAAWALGIGPEVIRAGIELF 715 I Q E++ K+S IPLT GA+ +QVENV+A+VGAAWAL + E I + F Sbjct: 647 AIVAAQGSFEKRLKLS---GIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALASF 703 Query: 716 GTERAEEQG 724 ++ G Sbjct: 704 ISDSGTAPG 712 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,328,106 Number of extensions: 103574 Number of successful extensions: 359 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 354 Number of HSP's successfully gapped: 2 Length of query: 732 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 640 Effective length of database: 1,184,250 Effective search space: 757920000 Effective search space used: 757920000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)