BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2022.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA deformyl...   342   1e-95
gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbas...    91   4e-20

>gi|300311484|ref|YP_003775576.1| N-formylmethionyl-tRNA
           deformylase/polypeptide deformylase [Herbaspirillum
           seropedicae SmR1]
          Length = 178

 Score =  342 bits (876), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 165/178 (92%), Positives = 173/178 (97%)

Query: 1   MAIREILKMGDPRLLRQAQPVTDFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60
           MAIREILKMGDPRLLRQAQPVT+FGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV
Sbjct: 1   MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60

Query: 61  IFGFGHNQRYPDAPAVPETVLINPVLTPLSEEEEEGWEGCLSVPGMRGVVPRWRQLRYQG 120
           IFGFG NQRYPDAP VPETVLINPVLTPLSE+EEEGWEGCLSVPGMRGVVPRW +LRYQG
Sbjct: 61  IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120

Query: 121 FDQNGHPIDRTVDGFHARVVQHECDHLQGILYPMRIRDFRQFGFTEILFPDLDPSQDD 178
            DQNG PIDR+V+GFHARVVQHECDHLQGILYPMRIRDFR+FGFTE+LFP+LDPSQDD
Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178


>gi|300313962|ref|YP_003778054.1| polypeptide deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score = 91.3 bits (225), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 8/152 (5%)

Query: 1   MAIREILKMGDPRLLRQAQPVTDFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60
           MA+  IL+  DPRL + A PVT F    + +LV DM +TM A  G GLAA Q+ V  Q+V
Sbjct: 1   MALLNILRYPDPRLHKIAAPVTVFDE-RIKKLVADMAETMYAAPGVGLAATQVDVHEQVV 59

Query: 61  IFGFGHNQRYPDAPAVPETVLINPVLTPLSEEEEEGWEGCLSVPGMRGVVPRWRQLRYQG 120
           +     + +          V INP +   SE++    EGCLSVPG+   V R  +++ + 
Sbjct: 60  VIDVSDDGKNL-------QVFINPEIVWASEDKRVYDEGCLSVPGIYDGVERPARVKVRA 112

Query: 121 FDQNGHPIDRTVDGFHARVVQHECDHLQGILY 152
           FD +G   +   D   A  +QHE DHL+G ++
Sbjct: 113 FDADGKAFEVDADELLAVCIQHEMDHLKGKVF 144


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.144    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 630,745
Number of extensions: 27166
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)