BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2021.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate uridyly...   562   e-161
gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate uridyly...   405   e-114

>gi|300311483|ref|YP_003775575.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  562 bits (1448), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/295 (92%), Positives = 286/295 (96%)

Query: 1   MIKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGR 60
           MIKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGR
Sbjct: 2   MIKKIKKAVFPVAGLGSRFLPATKAQPKEMLPIVDKPLIHYAVEEAVAAGITEMVFITGR 61

Query: 61  NKRAIEDHFDKAYELESELEAAGKQKLLDIVRNVVPKSVNCIFIRQSEPLGLGHAVLCAR 120
           NKRAIEDHFDKAYELESELEAAGK+KLL+IV+NVVPKSVNCIFIRQS PLGLGHAVLCAR
Sbjct: 62  NKRAIEDHFDKAYELESELEAAGKKKLLEIVQNVVPKSVNCIFIRQSVPLGLGHAVLCAR 121

Query: 121 PVVGEEPFAILLADDFMDTDPGVKPVMAQMTDIYAREGMSMLAVQEVPKSDTRQYGIVSA 180
           PVVGEEPFA+LLADDFMDTD GVKPV+AQMT+IY REGMSMLAVQEVP+SDT+QYGIVSA
Sbjct: 122 PVVGEEPFAVLLADDFMDTDAGVKPVLAQMTEIYEREGMSMLAVQEVPQSDTKQYGIVSA 181

Query: 181 TPYQPDLERINAIVEKPAPEEAPSTLAVVGRYVLNSRIFHYLENIPRGAGGEIQLTDGIA 240
           TPYQP+LER+NAIVEKPAPEEAPSTLAVVGRYVLN+RIF YLENI RGAGGEIQLTDGIA
Sbjct: 182 TPYQPNLERVNAIVEKPAPEEAPSTLAVVGRYVLNNRIFDYLENIGRGAGGEIQLTDGIA 241

Query: 241 KLMQAESVLAYRYQGQRYDCGSKLGYLKAMVAMGLKHPETGPAFSEYLHDVATKQ 295
           KLMQAESVLAYRYQGQRYDCGSKLGYLKA VAMG+KHPETG AFSE+L DVA KQ
Sbjct: 242 KLMQAESVLAYRYQGQRYDCGSKLGYLKATVAMGMKHPETGAAFSEFLKDVAGKQ 296


>gi|300311978|ref|YP_003776070.1| UTP-glucose-1-phosphate
           uridylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  405 bits (1041), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/266 (72%), Positives = 224/266 (84%)

Query: 30  MLPIVDKPLIHYAVEEAVAAGITEMVFITGRNKRAIEDHFDKAYELESELEAAGKQKLLD 89
           MLPIVDKPLI YAVEEAV AGITEM+FITGRNKRAIEDHFDKAYELESELEAAGK KLL+
Sbjct: 1   MLPIVDKPLIQYAVEEAVEAGITEMIFITGRNKRAIEDHFDKAYELESELEAAGKVKLLE 60

Query: 90  IVRNVVPKSVNCIFIRQSEPLGLGHAVLCARPVVGEEPFAILLADDFMDTDPGVKPVMAQ 149
            +R+VVPK +NC+++RQ+EPLGLGHAVL A+P+VG+EPFA+LLADDFMD D G K VMAQ
Sbjct: 61  TIRHVVPKHINCVYVRQAEPLGLGHAVLLAKPLVGDEPFAVLLADDFMDVDAGQKNVMAQ 120

Query: 150 MTDIYAREGMSMLAVQEVPKSDTRQYGIVSATPYQPDLERINAIVEKPAPEEAPSTLAVV 209
           MT ++ REG S+LAVQ+VP+ +TRQYGIVS + Y   LE ++ IVEKPAPEEAPSTLAVV
Sbjct: 121 MTAMFEREGKSLLAVQDVPRPETRQYGIVSGSAYADRLELMSGIVEKPAPEEAPSTLAVV 180

Query: 210 GRYVLNSRIFHYLENIPRGAGGEIQLTDGIAKLMQAESVLAYRYQGQRYDCGSKLGYLKA 269
           GRYVL   IF  LENI  GAGGEIQLTD I+ L+Q E +LAYRY+GQR+DCGSKLGYLKA
Sbjct: 181 GRYVLTPAIFERLENIGTGAGGEIQLTDAISALLQQEQILAYRYEGQRFDCGSKLGYLKA 240

Query: 270 MVAMGLKHPETGPAFSEYLHDVATKQ 295
            VAMG KH E G  F+++L D A + 
Sbjct: 241 AVAMGFKHKEVGSGFAQFLQDFAAQH 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 939,438
Number of extensions: 39855
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)