BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2020.p
         (688 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herba...  1296   0.0  

>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score = 1296 bits (3354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/683 (92%), Positives = 661/683 (96%)

Query: 1   MQDDLFSAARPPQGAPEWLLRARALRDELNRHNHSYYVLDEPSIPDAEYDRLFQELQALE 60
           M  DLFSA RPPQGAP+WL+RA ALR +LNRHN+SYYVLD+PSIPDAEYDRLFQELQALE
Sbjct: 1   MPADLFSAGRPPQGAPDWLVRAFALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALE 60

Query: 61  TAHPELLTADSPTQRVGAGPLPQFEPVRHDIPMLSLGNGFTDEDIEAFDKRVRDGLETLQ 120
           TAHPELLT DSPTQRVGAGPLPQFEPVRHDIPMLSLGNGF+D+DIEAFDKRVRDGLETLQ
Sbjct: 61  TAHPELLTPDSPTQRVGAGPLPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETLQ 120

Query: 121 EVRYATELKFDGLAISLRYENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGENVPQ 180
           EVRYATELKFDGLAISLRYENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGE +PQ
Sbjct: 121 EVRYATELKFDGLAISLRYENGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQ 180

Query: 181 VIDVRGEVLMYKDDFARLNLRQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYG 240
           ++DVRGEVLMYKDDFARLN RQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYG
Sbjct: 181 LLDVRGEVLMYKDDFARLNQRQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYG 240

Query: 241 IGVLEGAEMPASHSALLDWYQQLGLPVCKERAVVTGAAGLLDFFRGIGTKRESLPYEIDG 300
           IGVLEGA+MP+SHSALLDWYQQLGLPVCKERAVVTGA GLL+FFRGIG KRESLPYEIDG
Sbjct: 241 IGVLEGADMPSSHSALLDWYQQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDG 300

Query: 301 VVYKVDRLDQQKHLGFVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPV 360
           VVYKVDRLDQQK LGFVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPV
Sbjct: 301 VVYKVDRLDQQKQLGFVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPV 360

Query: 361 FVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVACLPEKRPADARAFVMPG 420
           FVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVA +PEKRPADARAFVMP 
Sbjct: 361 FVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPA 420

Query: 421 ACPVCGSPIVRAEDEAVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDR 480
           ACPVCGSPIVRAEDEAVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDR
Sbjct: 421 ACPVCGSPIVRAEDEAVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDR 480

Query: 481 QVVNTPADLYRLGLSALAELDRMAEKSAQNVLDALQKSKTTTLARFIYALGIRHVGEATA 540
           +VVNTPADLYRLGLSALAELDRMAEKSAQNVLDALQKSK+TTLARFIYALGIRHVGEATA
Sbjct: 481 KVVNTPADLYRLGLSALAELDRMAEKSAQNVLDALQKSKSTTLARFIYALGIRHVGEATA 540

Query: 541 KELARHFGGIDRLLAASEEQLLEVADIGPVVASSIRAFFSDPVNLELVEQLRAVGIHWPE 600
           KELARHFGG+D++LAASE QLLEVAD+GPVVA+SIR+FF D +N+ELVEQLRAVG+HWPE
Sbjct: 541 KELARHFGGLDKILAASEAQLLEVADVGPVVATSIRSFFDDALNVELVEQLRAVGVHWPE 600

Query: 601 EQGVDTGTKHLAGKTFVLTGTLPNLSRDEAAQLIEAAGGKVSGSVSKKTSYVVAGAEAGS 660
             GV+   KHLAGKTFVLTGTLPNLSRDEA+QLIEAAGGKV+GSVSKKT+YVVAGAEAGS
Sbjct: 601 SAGVEAAAKHLAGKTFVLTGTLPNLSRDEASQLIEAAGGKVTGSVSKKTTYVVAGAEAGS 660

Query: 661 KLAKAEELGIAILDEDGLKLMCA 683
           KLAKAEELGIAILDEDGLK +CA
Sbjct: 661 KLAKAEELGIAILDEDGLKALCA 683


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,148,061
Number of extensions: 94496
Number of successful extensions: 303
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 596
Effective length of database: 1,184,250
Effective search space: 705813000
Effective search space used: 705813000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)