BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2018.p (1176 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPa... 2351 0.0 >gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase [Herbaspirillum seropedicae SmR1] Length = 1176 Score = 2351 bits (6093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1160/1176 (98%), Positives = 1171/1176 (99%) Query: 1 VRLTSIKLSGFKSFVEPTHFQVPGQLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES 60 +RLTSIKLSGFKSFVEPTHFQVPGQLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES Sbjct: 1 MRLTSIKLSGFKSFVEPTHFQVPGQLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES 60 Query: 61 MQDVIFNGSTHRKPAGRASVELVFDNSAGKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQ 120 MQDVIFNGSTHRKPAGRASVELVFDNSAGKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQ Sbjct: 61 MQDVIFNGSTHRKPAGRASVELVFDNSAGKAAGQWGQYAEIAVKRTLTRDGTSSYYINNQ 120 Query: 121 SVRRRDIQDIFLGTGLGPRAYAIIGQGMISRIIEARPEELRIFLEEAAGVSKYKERRRET 180 SVRRRDIQDIFLGTGLGPRAYAIIGQGMISRIIEARPEELRIFLEEAAGVSKYKERRRET Sbjct: 121 SVRRRDIQDIFLGTGLGPRAYAIIGQGMISRIIEARPEELRIFLEEAAGVSKYKERRRET 180 Query: 181 ENRLHDTTENLTRLEDILRELNTNLEKLEAQAAVAKKFHELQNDQEEKQKLLWLLRKNEA 240 ENRLHDTTENLTRLEDILRELNTNLEKLEAQAAVAKKFHELQNDQEEKQKLLWLLRKNEA Sbjct: 181 ENRLHDTTENLTRLEDILRELNTNLEKLEAQAAVAKKFHELQNDQEEKQKLLWLLRKNEA 240 Query: 241 KAEQERFFKEIERAQIDLEEQTAKLRHVETELEHMRQAHYGAGDRLHQAQGHLYQTNSEI 300 KAEQERFFKEIERAQIDLEEQTAKLRHVETELEHMRQAHY AGDRLHQAQGHLYQTNSEI Sbjct: 241 KAEQERFFKEIERAQIDLEEQTAKLRHVETELEHMRQAHYAAGDRLHQAQGHLYQTNSEI 300 Query: 301 GSLEAQIKFVIESRNRLQAQLNSLGAQRDQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQ 360 GSLEAQIKFVIESRNRLQAQLNSLGAQRDQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQ Sbjct: 301 GSLEAQIKFVIESRNRLQAQLNSLGAQRDQWQRQGTQQQEELAEAEIQLEEFGMRVEQAQ 360 Query: 361 HAVQDTSDRLPSLEAAWRESQVKTTESRGKIMQVQQQIELQSTHQRNASNILSGLAARRE 420 HAVQDTSDRLPSLEAAWRESQVKTTESRGKIMQVQQQIELQSTHQRNASNILSGLAARRE Sbjct: 361 HAVQDTSDRLPSLEAAWRESQVKTTESRGKIMQVQQQIELQSTHQRNASNILSGLAARRE 420 Query: 421 RLMQEKNGMALPDETHLSNLRMQLEEKQASLEEANLYLEEAQEQLPRLEEERRTAQELVS 480 RLMQEKNGMA+PDE HLSNLRMQLEEKQASLEEA++YLEEAQEQLPRLEEERRTAQELVS Sbjct: 421 RLMQEKNGMAMPDEVHLSNLRMQLEEKQASLEEASMYLEEAQEQLPRLEEERRTAQELVS 480 Query: 481 KETSANAQLEARLTALKQLQESVQAQGKVQPWLEKHGLAELPRLWQKLHIESGWETALEA 540 KETSANAQLEARLTALKQLQESVQAQGKVQPWLEKHGLAELPRLWQKLHIESGWETALEA Sbjct: 481 KETSANAQLEARLTALKQLQESVQAQGKVQPWLEKHGLAELPRLWQKLHIESGWETALEA 540 Query: 541 VLRERMSALEMSNLDWAKAFFSDAPPAKLALYAPNAGLAQPDAQPVAGLKPFVTLLQLND 600 VLRERMSALEMSNLDWAKAFFSDAPPAKLALYAPNAGLAQP+AQPVAGLKPFVTLLQLND Sbjct: 541 VLRERMSALEMSNLDWAKAFFSDAPPAKLALYAPNAGLAQPEAQPVAGLKPFVTLLQLND 600 Query: 601 PGLRALMNDWLNHIYIADDTATAFAERSKLPLGGLFVTRQGHVVSNSSVRFYASDSEQDG 660 PGLRALMNDWLNHIYIADDTATAFAER+KLPLGGLFVTRQGHVVSNSSVRFYASDSEQDG Sbjct: 601 PGLRALMNDWLNHIYIADDTATAFAERAKLPLGGLFVTRQGHVVSNSSVRFYASDSEQDG 660 Query: 661 MLARQQEIENITKQQRAQAMLAEEAKGRAVRAEAALSAASQRLQELRQRVNSLTQSAHSL 720 MLARQQEIENITKQQRAQAMLAEEAKGRAVRAEAAL AASQRLQELRQRVNSLTQSAHSL Sbjct: 661 MLARQQEIENITKQQRAQAMLAEEAKGRAVRAEAALLAASQRLQELRQRVNSLTQSAHSL 720 Query: 721 QIEVMKLSEVQERFNQRSTQIATDLEEIGMQEAEQQQVQAESEARFEELDIELAELQEQH 780 QIEVMKL+EVQERFNQRSTQIATDLEEI MQEAEQQQVQAESEARFEELDIELAELQEQH Sbjct: 721 QIEVMKLAEVQERFNQRSTQIATDLEEISMQEAEQQQVQAESEARFEELDIELAELQEQH 780 Query: 781 ENGQTDYLNKEQQLNDARTRLRELERAAQESEFAEKSHRNKIEELKRGIATALEQAAQLF 840 ENGQTDYLNKEQQLNDARTRLRELERAAQE+EFAEKSHRNKIEELKRGIATALEQAAQLF Sbjct: 781 ENGQTDYLNKEQQLNDARTRLRELERAAQETEFAEKSHRNKIEELKRGIATALEQAAQLF 840 Query: 841 ASMQQGNLELESLDDQAAQAGLQELLDRRSEQERALADARHELDQLSQQLRSHEEARLQA 900 ASMQQG+LELESLDDQAAQAGLQELLDRRSEQERALADARHELDQLSQQLRSHEE+R+QA Sbjct: 841 ASMQQGSLELESLDDQAAQAGLQELLDRRSEQERALADARHELDQLSQQLRSHEESRMQA 900 Query: 901 ERSLQPQRDRITELQLKEQAARLNQEQFSEALAQTQADEAALSEKLTSDMRPSYLQGEVT 960 ERSLQPQRDRITELQLKEQAARLNQEQFSEALAQTQADEAALSEKLTSDMRPSYLQGEVT Sbjct: 901 ERSLQPQRDRITELQLKEQAARLNQEQFSEALAQTQADEAALSEKLTSDMRPSYLQGEVT 960 Query: 961 RLTNAIAALGAVNLAALDELATASERKHFLDAQHADLNEAITTLQDAIHKIDMETRDLLQ 1020 RLTNAIAALGAVNLAALDELATASERKHFLDAQHADLNEAITTLQDAIHKIDMETRDLLQ Sbjct: 961 RLTNAIAALGAVNLAALDELATASERKHFLDAQHADLNEAITTLQDAIHKIDMETRDLLQ 1020 Query: 1021 DTFDKVNHHFSELFPVLFGGGQAKLIMTGDEILDSGVQVMAQPPGKKNATIHLLSGGEKA 1080 DTFDKVN HFSELFPVLFGGGQAKLIMTGDEILDSGVQVMAQPPGKKNATIHLLSGGEKA Sbjct: 1021 DTFDKVNRHFSELFPVLFGGGQAKLIMTGDEILDSGVQVMAQPPGKKNATIHLLSGGEKA 1080 Query: 1081 LTATALVFSMFQLNPAPFCLLDEVDAPLDDANTERFANMVKRMSDHTQFLFISHNKIAME 1140 LTATALVFSMFQLNPAPFCLLDEVDAPLDDANTERFANMVKRMSDHTQFLFISHNKIAME Sbjct: 1081 LTATALVFSMFQLNPAPFCLLDEVDAPLDDANTERFANMVKRMSDHTQFLFISHNKIAME 1140 Query: 1141 MAQQLIGVTMQEQGVSRIVAVDMESAANFSSAEQAA 1176 MAQQLIGVTMQEQGVSRIVAVDMESAANFSSAEQAA Sbjct: 1141 MAQQLIGVTMQEQGVSRIVAVDMESAANFSSAEQAA 1176 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.127 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,906,106 Number of extensions: 108782 Number of successful extensions: 617 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 608 Number of HSP's successfully gapped: 1 Length of query: 1176 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1080 Effective length of database: 1,165,310 Effective search space: 1258534800 Effective search space used: 1258534800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 136 (57.0 bits)