BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2017.p (584 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 912 0.0 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 464 e-132 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 464 e-132 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 363 e-101 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 361 e-100 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/603 (84%), Positives = 538/603 (89%), Gaps = 19/603 (3%) Query: 1 MKSLKAQLLSALVVMWMGLLLLAAWSAYSARENMMEERKDGLRRVVEAANGVVNSYVADV 60 MKSLKAQLLSALVVMW GLLLLAAWSA+SARENM++ERKDGLRRVVEAANGVV SYVADV Sbjct: 1 MKSLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADV 60 Query: 61 AAGKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEG 120 AAG++SKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAM+GKNVADRKDSEG Sbjct: 61 AAGRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEG 120 Query: 121 KAYYVEMMKVGQEKQQGFVQYMGRLPGTDDNNRTPKMSYVVHNQAWDWFIVTGVFLSDVQ 180 KAYYVEMMKVGQEKQ GFVQYMGRLPGTDD+NRTPKMSYVVHNQ WDWFIVTGVFLSDVQ Sbjct: 121 KAYYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQ 180 Query: 181 AQFRADVSRLLGILLVVGVVVSLMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ 240 AQFRAD+ RLLGILLVVGVVVS+MMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ Sbjct: 181 AQFRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQ 240 Query: 241 TRAGDTRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLA 300 TR GDTRSLLY MATMRERLAGVIKGIRQGT+AIDIGA EIAAGNLDLSSRTEEQAGSLA Sbjct: 241 TRPGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLA 300 Query: 301 MTASNMDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISD 360 TASNMD LTATVKQNADNARQAGQLA+SAS+IA RGG+VVGQVVQTMEGIT SSRKI+D Sbjct: 301 TTASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIED 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIK LIED Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIED 420 Query: 421 SVQRVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQV 480 SVQRVGSGSDQVARAG+TMGEVV+AV+ LTDIV EISAASEEQR GIEQVNLA+GEMDQV Sbjct: 421 SVQRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQV 480 Query: 481 TQQNAALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASVAAKPTL 540 TQQNAALVE+AAAAAGSLEEQARRLKAAV+TF+V+GEE ++ AS+ A + A + Sbjct: 481 TQQNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASSLATATATATPTAV 540 Query: 541 --------------KP-AAKPMVK----PVAPLPPPSKAVALAKPASAGRSSPANTDGDW 581 KP A KP+ K P A A AKPASA ++ PA DGDW Sbjct: 541 RKAPAAAAIPVASAKPLAGKPLTKPAGGAAPLPAPAKAAPAAAKPASAAKALPAGDDGDW 600 Query: 582 ETF 584 ETF Sbjct: 601 ETF 603 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 464 bits (1195), Expect = e-132, Method: Compositional matrix adjust. Identities = 250/483 (51%), Positives = 332/483 (68%), Gaps = 3/483 (0%) Query: 3 SLKAQLLSALVVMWMGLLLLAAWSAYSARENMMEERKDGLRRVVEAANGVVNSYVADVAA 62 SLK +L LV WM LL L+ W AY R+ + ER+ GL+ V E A + Y + Sbjct: 5 SLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAKLESD 64 Query: 63 GKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEGKA 122 GK+S+E+AQK A+ RI RY GD Y+ + D+ V++M P N + G+N+ D KD++G Sbjct: 65 GKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDAKGNE 124 Query: 123 YYVEMMKVGQEKQ-QGFVQYMGRLPGTDDNNRTPKMSYVVHNQAWDWFIVTGVFLSDVQA 181 Y + G +G+++Y PG+D +PKM +V + W+W ++ V+ D+QA Sbjct: 125 LYKMIAATGSSGAGKGYLEYWWPRPGSD--QPSPKMGFVKRFKPWNWDLICSVYSDDIQA 182 Query: 182 QFRADVSRLLGILLVVGVVVSLMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQT 241 FR + + + +L+ +GV++SL+ + R I S+GGEP A ++A +IA GDLT + T Sbjct: 183 DFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVIHT 242 Query: 242 RAGDTRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAM 301 GD SL+ +A R+RL + GI+Q TE+I EIA GN+DLS+RTE+QAGSL Sbjct: 243 TQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSLEE 302 Query: 302 TASNMDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDI 361 TAS M+ LTATVKQNA NA+ A QLA+ A+++A +GG+VVGQVVQTME I SSRKI DI Sbjct: 303 TASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIVDI 362 Query: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDS 421 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DS Sbjct: 363 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLIDDS 422 Query: 422 VQRVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVT 481 V +V +G+ V RAG+TM EVVS++Q ++ +VSEI+ AS EQ GIEQV A+ +MD+ T Sbjct: 423 VGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDETT 482 Query: 482 QQN 484 QQN Sbjct: 483 QQN 485 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 464 bits (1194), Expect = e-132, Method: Compositional matrix adjust. Identities = 279/556 (50%), Positives = 366/556 (65%), Gaps = 17/556 (3%) Query: 3 SLKAQLLSALVVMWMGLLLLAAWSAYSARENMMEERKDGLRRVVEAANGVVNSYVADVAA 62 S +L LV+ + LL ++ +SA R +EERK L + + A +V Y A + Sbjct: 5 SFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALADS 64 Query: 63 GKISKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMIGKNVADRKDSEGKA 122 G +SKE+AQK A + I ++RY D Y I S +++M P + GK++++ KD G Sbjct: 65 GALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAGNN 124 Query: 123 YYVEMMKVGQEKQQGFVQYMGRLPGTDDNNRTPKMSYVVHNQAWDWFIVTGVFLSDVQAQ 182 +VE+ K G + + GFV Y+ P PK S+V+ + WDW + TG ++ D+ A Sbjct: 125 LFVEITKAGSKPEGGFVHYL--WPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 Query: 183 FRADVSRLLGILLVVGVVVSLMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTR 242 F + ++ + V + +++ I I ++GG+PA A ++A RIA GDLT ++T Sbjct: 183 FLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIETA 242 Query: 243 AGDTRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMT 302 GD+ SLLY + +MR+ L I I+ I + EIA+GNLDLS RTE+QAGS+ T Sbjct: 243 PGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEET 302 Query: 303 ASNMDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDII 362 AS M+ LTATVKQNADNARQA QLA SASE+A +GG VV QVVQTMEGIT+SSRKI+DII Sbjct: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI+DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSV 422 Query: 423 QRVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQ 482 +V +GS V +AG TM EVV++V+R+TDIV EIS+AS+EQ GI +V A+ +MD+ TQ Sbjct: 423 AKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 Query: 483 QNAALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASVAAKPTLKP 542 QNAALVE+AAAAA SL++QA L V F V+G + AS+A PT Sbjct: 483 QNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQ-------------ASIA--PTAPQ 527 Query: 543 AAKPMVKPVAPLPPPS 558 AAKP +PV P PP+ Sbjct: 528 AAKPATRPVQPTTPPA 543 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/316 (63%), Positives = 244/316 (77%) Query: 203 LMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTRAGDTRSLLYEMATMRERLAG 262 L+ + + R + LGGEP YA IA +IA+GDLT VQT+ GD SLL+ + MR+ L Sbjct: 201 LIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLVS 260 Query: 263 VIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMTASNMDSLTATVKQNADNARQ 322 ++ +RQGT I+ + EIA+GNLDLSSRTE+QA SL TAS M+ L TVKQNADNA+Q Sbjct: 261 IVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAKQ 320 Query: 323 AGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDIIGVIDGIAFQTNILALNAAVE 382 A QLA SASE+A +GG+VV QVV TM+GI SSRKI DII VIDGIAFQTNILALNAAVE Sbjct: 321 ASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAVE 380 Query: 383 AARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSVQRVGSGSDQVARAGETMGEV 442 AARAGEQGRGFAVVASEVRSLAQRSA AAKEI LI DSV ++ GS V +AG+TM V Sbjct: 381 AARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMENV 440 Query: 443 VSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQQNAALVEEAAAAAGSLEEQA 502 V++V+R+TD+V+EIS AS+EQ GI QVN A+ MD+ TQQN+ALVEEAAAAA S++EQA Sbjct: 441 VNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQA 500 Query: 503 RRLKAAVATFQVEGEE 518 L VATF+++ ++ Sbjct: 501 GALSGLVATFRLDAQQ 516 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/398 (56%), Positives = 284/398 (71%), Gaps = 15/398 (3%) Query: 195 LVVGVVVSLMMLAII-----RRITGSLGGEPAYAVDIATRIANGDLTVQVQTRAGD-TRS 248 L+ G ++LM+ ++ IT L A AV +A R+A+GDLT +++ R+ D T + Sbjct: 195 LIGGGAIALMLAVLLAWWLANNITRPL----ALAVQLARRVASGDLTARIEVRSRDETGA 250 Query: 249 LLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMTASNMDS 308 LL + M E L ++ G+R+GTE I + EIA GNLDLSSRTE+QA SL TAS+M+ Sbjct: 251 LLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEE 310 Query: 309 LTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDIIGVIDGI 368 LT+TV+QN NAR+A ++A +AS+IA GG VV +VV TME I +SSRKI DII VIDGI Sbjct: 311 LTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDGI 370 Query: 369 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSVQRVGSG 428 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI DSV +V SG Sbjct: 371 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESG 430 Query: 429 SDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQQNAALV 488 S V AG+TM E+V +VQR+T++++EISAA EEQR GIEQV+ AVG+MDQVTQQNAALV Sbjct: 431 SLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALV 490 Query: 489 EEAAAAAGSLEEQARRLKAAVATFQVEGEEV--IAPQTASATVKAASVAAKPTLKPAAKP 546 E+AAAA+ SL+EQA+ L AV+ F++E + +AP+ A A+V A+ +P + + P Sbjct: 491 EQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGVRPATRSSRLP 550 Query: 547 MVKPVAPLPPPSKAVALAKPASAGRSSPANTDGDWETF 584 PV P PS + PAS R S A+ D +W TF Sbjct: 551 --SPVGPSASPSASPMHPAPASGSRLSSADAD-EWVTF 585 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,230,743 Number of extensions: 40505 Number of successful extensions: 472 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 222 Number of HSP's successfully gapped: 72 Length of query: 584 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 494 Effective length of database: 1,193,720 Effective search space: 589697680 Effective search space used: 589697680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)