BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2011.p (660 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 1326 0.0 gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 307 2e-84 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 231 1e-61 gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 220 2e-58 gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbasp... 74 4e-14 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 1326 bits (3432), Expect = 0.0, Method: Compositional matrix adjust. Identities = 650/660 (98%), Positives = 656/660 (99%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDY 60 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELH D GNID+ Sbjct: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDF 60 Query: 61 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHVAELHTA 120 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNH+AELHTA Sbjct: 61 PARWRMAYVAQETPALDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHIAELHTA 120 Query: 121 LADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP 180 LADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP Sbjct: 121 LADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEP 180 Query: 181 TNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFER 240 TNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFER Sbjct: 181 TNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFER 240 Query: 241 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA 300 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA Sbjct: 241 QRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAA 300 Query: 301 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDADKIIVHGIDFSLQNGQRIGLLGV 360 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPD DKIIVHGIDFSLQNGQRIGLLGV Sbjct: 301 EFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDEDKIIVHGIDFSLQNGQRIGLLGV 360 Query: 361 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR 420 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR Sbjct: 361 NGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRLAPDVR 420 Query: 421 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR Sbjct: 421 EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETR 480 Query: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAA 540 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAA Sbjct: 481 EALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDYKDWLFKTKLAA 540 Query: 541 RNDAAAAAPLPTSSQPVEAAPASLVDRKEQKRLEAEQRQKMSALKKPIEARIKRLDEQIA 600 RNDAAAAAPLPT+SQPVE+APA+LVDRKEQKRLEAEQRQKMSALKKPIEARIKRLDEQIA Sbjct: 541 RNDAAAAAPLPTASQPVESAPAALVDRKEQKRLEAEQRQKMSALKKPIEARIKRLDEQIA 600 Query: 601 KLNVRKGEIDARLASPDIYDAANKDELKTLITDQAYCSKELEQLENEWLEQQEALEQLQA 660 KLNVRK EIDARLASPDIYDAANK+ELKTLITDQAYCSKELEQLENEWLEQQEALEQLQA Sbjct: 601 KLNVRKAEIDARLASPDIYDAANKEELKTLITDQAYCSKELEQLENEWLEQQEALEQLQA 660 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 307 bits (787), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 184/541 (34%), Positives = 285/541 (52%), Gaps = 28/541 (5%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDY 60 M+ +++Q G KPL EN+ + G++ GLIGANG GKS+ +L G+L P GN+ Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 Query: 61 PARWRMAYVAQETPALDRP-AIEYAIDGDAHLRQLEAELARAEAQPDDKHDGN-HVAELH 118 R+ + Q+ A + ++ + G + +E A PD D A+L Sbjct: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 Query: 119 TALADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLD 178 A+ D YT +RA +LLLG+G +EQ P+++ + GW++R+ LAQAL D+LLLD Sbjct: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 Query: 179 EPTNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAF 238 EPTN+LD++ I WLE+ L T++IISHDR FL+ V + +D LK Y GNY + Sbjct: 181 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 Query: 239 ----ERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELA 294 + R+ QL A K + + A LQ F+ RF A +KARQA SR K + K++ Sbjct: 241 MLASSQARAQQLAANA----KAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIK--- 293 Query: 295 PLRAAAEFSFEFREPLSAPNPLLVMEKVNAGYH--IEGKNGAPDADKIIVHGIDFSLQNG 352 E +P S NP + E + +E + D+ I ++ G Sbjct: 294 ---------VEDIKPSSRVNPFIRFEGEKKLHRLAVETQGITKTYDRDIFKNFSIMVEAG 344 Query: 353 QRIGLLGVNGAGKSTLIKTVAGEID---PLSGTARLGKGLVIGYFAQHQVEMLRHDESPL 409 ++I ++G NGAGK+TL++++ G++ P G + + +GY Q E E+ Sbjct: 345 EKIAIIGANGAGKTTLLRSIGGDVTGLHPDGGLVKWAENANVGYMPQDPTEEFAGGETLT 404 Query: 410 -WHLTRLAPDVREQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLL 468 W +Q +R LG F+G S+ SGGEK R+ ++ R N+LL+ Sbjct: 405 DWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLM 464 Query: 469 DEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDD 528 DEPTNH+D+E+ E+L +AL ++ GTL+ VSHDR + + + L V +G++ F G +D Sbjct: 465 DEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGGYED 524 Query: 529 Y 529 Y Sbjct: 525 Y 525 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 231 bits (589), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 194/653 (29%), Positives = 302/653 (46%), Gaps = 66/653 (10%) Query: 1 MIRFQQVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDY 60 +I L G LL++ + +L G++IGLIG NG GKSSL ++ G D G + Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 61 PARWRMAYVAQETPALDRPAIEYAI-DGDAHLRQLEAELARAEAQPDDKHDGNHVAELH- 118 ++AYV QE + + A+ G L L AE Q +D + +H Sbjct: 63 QQNLKIAYVDQEPHFPEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDDALLERMHQ 122 Query: 119 --TALADADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLL 176 T L ADA+++ ++ E L L + + + SGG + R+ LA L+ D+LL Sbjct: 123 IQTVLDAADAWSIGNKVETTLDKLNLNRDAR---IGELSGGMKKRVALACGLVGNPDVLL 179 Query: 177 LDEPTNHLDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYS 236 LDEPTNHLD +I+WLE L+ ++G++L I+HDR FLD V I+ +D K+ + GN++ Sbjct: 180 LDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGNFT 239 Query: 237 AFERQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPL 296 ++ +++ EL+A ++ + A F+ + + K QA+ R + ++ L L Sbjct: 240 TYQTRKA---ELLA----NEEVENAKFDKFLAQEEVWIRKGVQAR-RTRDEGRVRRLEAL 291 Query: 297 RA--------AAEFSFEFREPLSAPNPLLVMEKVNAGYHIEGKNGAPDADKIIVHGIDFS 348 R + E + + +E VN Y K IV Sbjct: 292 RVQRSERRERQGQVKLEVGTGERSGKIVAELENVNKAY----------GPKTIVRDFSTI 341 Query: 349 LQNGQRIGLLGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESP 408 L G ++GL+G NGAGK+TL+K + GE P SGT + G + + YF Q + ++ ++E+ Sbjct: 342 LMRGDKVGLIGQNGAGKTTLLKLILGEEAPDSGTVKQGTKMQVAYFDQMRAQL--NEETT 399 Query: 409 LWHLTRLAPDVRE-----QELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRP 463 L D E + + +L F F A S + SGGE+ RL LA + + Sbjct: 400 LADTIAPGSDWVEVNGQRKHVMTYLSDFLFAPERARSPVRTLSGGERNRLLLARLFAKPA 459 Query: 464 NLLLLDEPTNHLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGK--LQP 521 N+L+LDEPTN LD++T E L L ++EGT+ LVSHDR L Q +I +EG + Sbjct: 460 NVLVLDEPTNDLDIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQ-VIASEGNGVWRE 518 Query: 522 FDGDLDDYKDWLFKTKLAARNDAAAAAPLPTSSQPVEAAPASLVDRKEQK------RLEA 575 + G Y DW P A A D+ E K Sbjct: 519 YVG---GYSDW--------------ERQRPAQQAASSKAAAKAADKSEVKAESTMAAPVV 561 Query: 576 EQRQKMSALKKPIEARIKRLDEQIAKLNVRKGEIDARLASPDIYDAANKDELK 628 L + + L ++IA L + E+ A+LA PD+Y + +K Sbjct: 562 APVAAKKKLSYKEQRELDELPKRIAALEAEQKELSAKLADPDLYKKGADEAVK 614 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 166/541 (30%), Positives = 273/541 (50%), Gaps = 52/541 (9%) Query: 14 KPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDYPARWRMAYVAQET 73 + +L+++ L+ PG KIG++G NG+GKS+L ++ G G + Y+ QE Sbjct: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMPNLNIGYLPQE- 77 Query: 74 PALD-----RPAIEYAI----DGDAHLRQLEAELARAEAQPDDKHDGNHVAELHTALADA 124 P LD R +E A+ + A L + A A AE D A L +A A Sbjct: 78 PQLDAEKTVRQEVESALGEVFEAQAKLDAVYA--AYAEEDADFDALATEQARLEAIIAAA 135 Query: 125 DAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHL 184 D ++ + E + L + + SGG + R+ L + L+ D+LLLDEPTNHL Sbjct: 136 DGNSLNQQLE--MAADALRLPPWDAKIGVLSGGEKRRVALCKLLLSKPDMLLLDEPTNHL 193 Query: 185 DLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAFERQRSA 244 D +++ WLE +L+R+ GT++ I+HDR FLD I+ +D + GNYS++ Q+ A Sbjct: 194 DAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLEQKEA 253 Query: 245 QLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAAAEFSF 304 +L+ +Q+ A ++ + K RQA+S+ + L++ EL +E+ + Sbjct: 254 RLKQEEASESARQKTIAKELEWV----RQNPKGRQAKSKAR-LARFNEL------SEYEY 302 Query: 305 EFRE-------PLSA--PNPLLVMEKVNAGYHIEGKNGAPDADKIIVHGIDFSLQNGQRI 355 + R P++ N ++ + V+ GY D++++ ++F + G + Sbjct: 303 QKRNETQEIFIPVAERLGNEVIEFKNVSKGY----------GDRLLIDDLNFKIPAGAIV 352 Query: 356 GLLGVNGAGKSTLIKTVAGEIDPLSGTARLGKGLVIGYFAQHQVEMLRHDESPLWHLTRL 415 G++G NGAGKSTL + +AG P SG LG + + Q + ++ ++ ++ Sbjct: 353 GIIGPNGAGKSTLFRMLAGRETPDSGEVVLGPTVKVSLVDQSREDL--GNKKTVFEDVSG 410 Query: 416 APDVR-----EQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDE 470 D+ E R +LG FNF G + SGGE+ RL LA + Q N+LLLDE Sbjct: 411 GADILTVGRFEMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGNVLLLDE 470 Query: 471 PTNHLDLETREALTMALAQFEGTLVLVSHDRHLL-RATTDQFLIVAEGKLQPFDGDLDDY 529 P+N LD+ET AL AL +F GT++++SHDR L R T + ++ FDG+ +Y Sbjct: 471 PSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFDGNYQEY 530 Query: 530 K 530 + Sbjct: 531 E 531 >gi|300311552|ref|YP_003775644.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 102/209 (48%), Gaps = 27/209 (12%) Query: 334 APDADKIIVHGIDFSLQNGQRIGLLGVNGAGKSTLIKTVAGEIDPLSGTARL-------- 385 AP I+ GIDF++ G + ++G +G+GKSTL+ +AG P G+ RL Sbjct: 29 APAGRLTILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAGLDTPSEGSVRLDGEDIYAL 88 Query: 386 ---GKGLV----IGYFAQHQVEMLRH---DESPLWHLTRLAPDVREQE-LRNFLGSFNFN 434 G+ L+ +G+ Q ++L H E+ + L L D R +E LG Sbjct: 89 DEDGRALLRKRKLGFVFQ-SFQLLGHLNALENVMLPL-ELRGDARAREKATEMLGRVGL- 145 Query: 435 GTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTNHLDLETREALTMALAQFE--- 491 G+ S SGGE+ R+ALA P LLL DEPT LD T EA+ + + Sbjct: 146 GSRLKHSPKYLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAATGEAVIELMFELNRER 205 Query: 492 -GTLVLVSHDRHLLRATTDQFLIVAEGKL 519 TLVLV+HD + + A + + +A G+L Sbjct: 206 GSTLVLVTHD-NAMAARCQRTITIAAGRL 233 Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 38/206 (18%) Query: 16 LLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHPDLGNIDYPARWRMAYVAQETPA 75 +L+ +D T+ G + ++GA+G+GKS+L +L G +D P+ + ++ A Sbjct: 36 ILDGIDFTVAAGTTLAIVGASGSGKSTLLGLLAG--------LDTPSEGSVRLDGEDIYA 87 Query: 76 LDRPAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGNHVAELHTAL------ADADAYTV 129 LD DG A LR+ + Q H+ L + DA A Sbjct: 88 LDE-------DGRALLRKRKLGFVFQSFQLL-----GHLNALENVMLPLELRGDARA--- 132 Query: 130 RSRAEQLL--LGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDL- 186 R +A ++L +GLG L+ + SGG + R+ LA+A + LLL DEPT LD Sbjct: 133 REKATEMLGRVGLGSRLKHSPK---YLSGGEQQRVALARAFVTEPPLLLADEPTGSLDAA 189 Query: 187 --DAIIWLEDWLKRYEG-TLLIISHD 209 +A+I L L R G TL++++HD Sbjct: 190 TGEAVIELMFELNRERGSTLVLVTHD 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,973,187 Number of extensions: 85851 Number of successful extensions: 967 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 945 Number of HSP's successfully gapped: 48 Length of query: 660 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 569 Effective length of database: 1,188,985 Effective search space: 676532465 Effective search space used: 676532465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)