BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2009.p (221 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 427 e-121 gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 134 4e-33 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 133 1e-32 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 130 6e-32 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 129 2e-31 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 427 bits (1099), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/221 (96%), Positives = 219/221 (99%) Query: 1 MLMEILELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYV 60 MLMEILELLQQAAPTLAKGVGYTLLFALASM+GGLVLGFVLAVARIVPWRPIHWPAA+YV Sbjct: 1 MLMEILELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYV 60 Query: 61 SMMRGTPLLVQIFVVYYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTRGQW 120 SMMRGTPLLVQIFVVYYGLPG+GIEFSPLTAGVLTLSLNA AYLSESLRGAILGVTRGQW Sbjct: 61 SMMRGTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQW 120 Query: 121 NASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVI 180 NA++SVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVI Sbjct: 121 NAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVI 180 Query: 181 AVTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLGKAHQV 221 AVTFRPLPLYVAAAAIYW LSLCFEALQHRLEKKLGKAHQ+ Sbjct: 181 AVTFRPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAHQI 221 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 131/241 (54%), Gaps = 27/241 (11%) Query: 7 ELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIV-----PWR----PIHWPAA 57 ++Q AP AKGV TL +L S++ G V+G ++ + R+ PW+ + W A Sbjct: 6 SIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSMRWLAG 65 Query: 58 VYVSMMRGTPLLVQIFVVYYGL--------PGLGI----------EFSPLTAGVLTLSLN 99 YV+ RGTPL VQI ++++ + GL I ++ +G + LSLN Sbjct: 66 FYVAFFRGTPLFVQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTVALSLN 125 Query: 100 AGAYLSESLRGAILGVTRGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIK 159 AGAY+SE R I + RGQ A+ S+G+ Y T+RY+++PQA R +P + N I+L+K Sbjct: 126 AGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAITLLK 185 Query: 160 DTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLGKAH 219 D+SLVS I + EL A + V R Y+ + +Y+++++C + RLE K H Sbjct: 186 DSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLESKYSAPH 245 Query: 220 Q 220 + Sbjct: 246 R 246 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 133 bits (335), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 121/241 (50%), Gaps = 28/241 (11%) Query: 7 ELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRP----------IHWPA 56 E++ + P +G TL A+ ++ G G VL V R+ R + WP Sbjct: 8 EIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQWPI 67 Query: 57 AVYVSMMRGTPLLVQIFVVYYGL------PGLGI------------EFSPLTAGVLTLSL 98 YVS +RGTPL VQI ++++ L P G+ + + VL ++L Sbjct: 68 RFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAITL 127 Query: 99 NAGAYLSESLRGAILGVTRGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLI 158 N+GAY+SE R I + RGQ AS S+G++Y TLR +++PQA R +P + N I+++ Sbjct: 128 NSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNNAIAIV 187 Query: 159 KDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLGKA 218 KD+SL S I + EL A + V R Y+ + IYW ++L AL LE + GK Sbjct: 188 KDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLEARYGKG 247 Query: 219 H 219 Sbjct: 248 D 248 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 130 bits (328), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 71/199 (35%), Positives = 115/199 (57%) Query: 22 YTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVSMMRGTPLLVQIFVVYYGLPG 81 +T++ +L + V G V GFV+A+ R+ P + A+ Y+ +++G PLLV +FV Y+GL Sbjct: 18 WTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVAYFGLAI 77 Query: 82 LGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTRGQWNASYSVGLTYFQTLRYIIVPQ 141 G + +PL A ++ ++ A+L E RG I V + QW AS +G F+ L +I+PQ Sbjct: 78 AGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQLTKVILPQ 137 Query: 142 AVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWALS 201 AV+IA P ++ ++K+TSL SVI +L A + + TF+P ++ A IY+ L Sbjct: 138 AVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVALIYFCLC 197 Query: 202 LCFEALQHRLEKKLGKAHQ 220 AL E+KL +H+ Sbjct: 198 FPLSALSKHFERKLNVSHR 216 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 120/205 (58%), Gaps = 1/205 (0%) Query: 16 LAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVSMMRGTPLLVQIFVV 75 L + +TLL + + +GG + GF++A+ R P+ +AVY+ +++GTP+L+ +F+ Sbjct: 13 LLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFLS 72 Query: 76 YYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGVTRGQWNASYSVGLTYFQTLR 135 +YGL G + P+ A + +++ + AYL E RG I V QW AS ++ +T +Q LR Sbjct: 73 FYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEASTALAMTRWQQLR 132 Query: 136 YIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAA 195 Y+I+PQAVRI++P L+ ++K+TS+ S+I + EL A K V TF+P ++ A Sbjct: 133 YVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATFQPFLVFPIVAG 192 Query: 196 IYWALSLCFEALQHRLEKKLGKAHQ 220 IY+ LE+K AH+ Sbjct: 193 IYFVFCYPLSRFAFALERKY-HAHR 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 616,665 Number of extensions: 23833 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 19 Length of query: 221 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 139 Effective length of database: 1,231,600 Effective search space: 171192400 Effective search space used: 171192400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)