BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2001.p
         (343 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311463|ref|YP_003775555.1| hypothetical protein Hsero_2148...   456   e-129

>gi|300311463|ref|YP_003775555.1| hypothetical protein Hsero_2148
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  456 bits (1173), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/340 (69%), Positives = 275/340 (80%), Gaps = 6/340 (1%)

Query: 5   GFHAHQMRFHQRWPELRDPHVRALAWLLYAPDLLAPEAACWEGRIASLGVLSPEVAGWLH 64
              +HQ+RFHQRWPELRDPHVRALAWLLYAPDLLA +A CWE RIA+LG ++PEVAGWLH
Sbjct: 11  SLSSHQVRFHQRWPELRDPHVRALAWLLYAPDLLAQDAPCWECRIATLGPVAPEVAGWLH 70

Query: 65  DLQYDPALNAALHAHMAQQPSARLGGRYAEKLLGFYLRQQDCLVAANLQVHNQGPKRETL 124
           DL++DP LNAALHAH+A+QP+ARL GRYAE+LL FYL+QQD LVAANLQV  QGP  ETL
Sbjct: 71  DLEHDPGLNAALHAHLARQPTARL-GRYAEQLLTFYLQQQDWLVAANLQVRQQGPTHETL 129

Query: 125 GEFDFLVRSPEAESDGGVVHWEFATKFYLLQGRD-SAARQAADAFVGPNLADSLGRKMRK 183
           GEFDFLVR P  + + G++HWEFATKFYLL  +  + A+  A AFVGPNLAD+LG+KMRK
Sbjct: 130 GEFDFLVRPP-GDDELGLIHWEFATKFYLLAPQSAADAKANAGAFVGPNLADTLGKKMRK 188

Query: 184 IMQHQLMLSSHPAAQAVLPAPVVAARALVKGWLFYRQGEALVLPPAMGIAADHCRGFWCD 243
           IMQ QLMLS+HPAA +VLPAPVVAARALVKGWLFYR GEA+ LP ++G+AADHCRGFWCD
Sbjct: 189 IMQQQLMLSAHPAAASVLPAPVVAARALVKGWLFYRHGEAVELPASLGVAADHCRGFWCD 248

Query: 244 ASGLQALDDGSDDKMRYALLPRLSWLAPARLPPEQGMSLTQLLLRLEEMFRADDNPVMVA 303
              L A     D    Y +LPRL+WLAPAR P  QG+SL  L   LE  F AD +PVMVA
Sbjct: 249 LPRLAAQHQPDD---LYLILPRLAWLAPARAPLAQGLSLPALQAALETAFLADQSPVMVA 305

Query: 304 QCRLEQGAQPELLETARAFIVPPQWEARAADTVRHAILQV 343
           QCR+ +GA+PELLE AR FIVPP WE RAADT RHA++++
Sbjct: 306 QCRIAKGAEPELLELARGFIVPPGWEQRAADTARHALVRI 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,137,645
Number of extensions: 47852
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,212,660
Effective search space: 311653620
Effective search space used: 311653620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)