BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1999.p
         (164 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311461|ref|YP_003775553.1| acyltransferase [Herbaspirillum...   286   7e-79

>gi|300311461|ref|YP_003775553.1| acyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 165

 Score =  286 bits (732), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 139/163 (85%), Positives = 147/163 (90%)

Query: 2   SAVELPPTVSHPRYGILQFGVMSAADLDAVVQIEDAVYSHPWTRGNFQDSLYSGYQAQTL 61
           S   LP  V H +YG LQF  MS+ DLDAVV+IE AVYSHPWTRGNFQDSLYSGYQAQTL
Sbjct: 3   SVATLPVAVVHEKYGSLQFAPMSSEDLDAVVEIEQAVYSHPWTRGNFQDSLYSGYQAQTL 62

Query: 62  RDARGQLLGYFLVMLAVDEAHLLNISVAAAHQHQGLGRLLLDRATAVARQHQMRMMLLEV 121
           RD+ GQLLGYFLVMLAV+EAHLLNISVAAAHQHQGLGRLLLDRATA+ARQH M +MLLEV
Sbjct: 63  RDSAGQLLGYFLVMLAVEEAHLLNISVAAAHQHQGLGRLLLDRATALARQHGMHIMLLEV 122

Query: 122 RESNLHAAKVYRHYGFTEIGRRKNYYPAANQTREGAIVMSLPL 164
           RESNLHAAKVYRHYGF EIGRRKNYYPAANQ+REGAIVMSLPL
Sbjct: 123 RESNLHAAKVYRHYGFAEIGRRKNYYPAANQSREGAIVMSLPL 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 493,345
Number of extensions: 18159
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 86
Effective length of database: 1,250,540
Effective search space: 107546440
Effective search space used: 107546440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)