BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1989.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311452|ref|YP_003775544.1| signal transduction containing ...   694   0.0  
gi|300311437|ref|YP_003775529.1| signal transduction containing ...   149   4e-37

>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/399 (91%), Positives = 384/399 (96%)

Query: 1   MAVQDKSVPFPLVFLQPVADVHHVWTALSLHISPAVEDGSALLSRLFNEFDLLDALGGLN 60
           MA+QDKS+PFPLVFLQPVADVHHVWTALSLHISPAVEDGSALL+RLFNEF+L DALGGLN
Sbjct: 1   MALQDKSLPFPLVFLQPVADVHHVWTALSLHISPAVEDGSALLARLFNEFELHDALGGLN 60

Query: 61  CIIPVRDPAIFAPEFAQEIPQGQLALRVPVEHCVDPAKIDALDWLYSRGFAIIADGLPAQ 120
           CIIPV DPA FAPEF ++ PQGQLALRVPVEHCVDPA+IDALDWLYSRGF+I+ADGLPAQ
Sbjct: 61  CIIPVSDPASFAPEFREQFPQGQLALRVPVEHCVDPARIDALDWLYSRGFSILADGLPAQ 120

Query: 121 GASVFPFVESMALDVSMGHVPETTQWLHRLRGPHLAENVGDAVQFDACRVEGFRWFSGDY 180
           GASVFPFVES+ LD S+G +PET QWLH LRGPHLAENV DAVQFDACRV+GFRWFSGDY
Sbjct: 121 GASVFPFVESIVLDASIGKLPETAQWLHGLRGPHLAENVADAVQFDACRVQGFRWFSGDY 180

Query: 181 ALHPDSRLSQKNSISRARLLKLLELVARDADANALESLLKQDPALSYQLFKLVSSAAFGF 240
           ALHPDSRLSQKNSISRARLLKLLELVARDADAN LESLLKQDPALSYQLFKLVSSAAFGF
Sbjct: 181 ALHPDSRLSQKNSISRARLLKLLELVARDADANELESLLKQDPALSYQLFKLVSSAAFGF 240

Query: 241 SAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDESANPLLPRAAARAAMMEAMAHKVQC 300
           SAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDESANPLLPRAAARAAMMEAMA  + C
Sbjct: 241 SAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDESANPLLPRAAARAAMMEAMAQCIDC 300

Query: 301 TQEELDRAFITGMFSLLDILLGMPLHDIIEPLKLPVDIVNALVRRTGRLGKLLDVVERSE 360
           TQEELDRAFITGMFSLLDILLGMPL+DIIEPLKLPVDIVNALVRR+GRLGKLLDVVERSE
Sbjct: 301 TQEELDRAFITGMFSLLDILLGMPLNDIIEPLKLPVDIVNALVRRSGRLGKLLDVVERSE 360

Query: 361 DGRIPLRHSDLDAAGLDAQVYCRCLIQAFNWATRVSTEA 399
           DGRIPLRHSDLDAAGLDA+VYCRCLIQAFNWATRVSTEA
Sbjct: 361 DGRIPLRHSDLDAAGLDAEVYCRCLIQAFNWATRVSTEA 399


>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 175/361 (48%), Gaps = 12/361 (3%)

Query: 48  NEFDLLDALGGLNCIIPVRDPAIFAPEFAQEIPQGQLALRVPVEHCVDPAKIDALDWLYS 107
           +E  L + +G L   I V D A+   +F   +P  ++ L +     V P  +  +  L  
Sbjct: 64  SELGLSNVIGNLQGFINV-DAAVLMSDFIYFLPNDKVVLEILETVRVTPELVVRVRELVK 122

Query: 108 RGFAIIADGLPAQGASV---FPFVESMALDVSM---GHVPETTQWLHRLRGPHLAENVGD 161
            G+    D + A+   +    P V+ + +DV       + + +    R +   LAE V  
Sbjct: 123 AGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRAQKELLAEKVET 182

Query: 162 AVQFDACRVEGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANALESLLKQ 221
             QF+ C   GF +F G Y   P     +K   S+  ++ LL L+ R+ D   +   +K+
Sbjct: 183 LQQFNDCVTFGFDYFQGYYFAKPMILQGKKLEASKMVIMHLLTLLVRNVDNGEIVRFIKR 242

Query: 222 DPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDE--SANP 279
           D ALS  L +LV++  +GF   I +  QA+ +LGRRQL+RWLQ+LL+A    ++  + +P
Sbjct: 243 DVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKEQAHTMSP 302

Query: 280 LLPRAAARAAMMEAMAHKVQCTQEEL-DRAFITGMFSLLDILLGMPLHDIIEPLKLPVDI 338
           L+  AA R  M+E +  +++  + ++ + AF  G+ SL+D L GM +  ++  + +  +I
Sbjct: 303 LMILAATRGKMLELITTRIRPGRRKMSEMAFTVGIMSLVDALFGMSMETVLRQITVSTEI 362

Query: 339 VNALVRRTGRLGKLLDVVERSE--DGRIPLRHSDLDAAGLDAQVYCRCLIQAFNWATRVS 396
             AL+RRTG  G  L +VE +E  D         LD   L A  +      AF W   +S
Sbjct: 363 REALLRRTGFYGVALRLVECTEQRDQDQAEMQRLLDELQLSADDFFEAEKHAFEWGNSIS 422

Query: 397 T 397
            
Sbjct: 423 N 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,196,312
Number of extensions: 48831
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)