BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1988.p
         (417 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen II...   733   0.0  
gi|300312505|ref|YP_003776597.1| oxygen-independent coproporphyr...   111   1e-25

>gi|300311451|ref|YP_003775543.1| anaerobic coproporphyrinogen III
           oxidase oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/416 (86%), Positives = 377/416 (90%), Gaps = 3/416 (0%)

Query: 1   MIPIKPINPAMAELPATQAATGPAQAALAFLKPGSLQLAALPPLSLYVHFPWCVRKCPYC 60
           MI IKP+ P  A   A Q A+GPAQAALAFLKPGSLQL ALPPLSLYVHFPWCVRKCPYC
Sbjct: 1   MISIKPV-PVTAV--AGQGASGPAQAALAFLKPGSLQLTALPPLSLYVHFPWCVRKCPYC 57

Query: 61  DFNSHEVKGSFPEDDYLAALRSDLEQSLPLIWGRKIHTIFIGGGTPSLLSAAGLDRLLSD 120
           DFNSHEVK  FPE +YL ALR DLEQ+LPLIWGRKI++IFIGGGTPSLLSAAGLDRLLSD
Sbjct: 58  DFNSHEVKDGFPEQEYLDALRLDLEQALPLIWGRKIYSIFIGGGTPSLLSAAGLDRLLSD 117

Query: 121 LRTLLPFDSDIEITMEANPGTFEADKFRSYRASGINRLSIGIQSFNSQHLHALGRIHDGD 180
           LRTLLP D+DIEITMEANPGTFEADKFRSYR SGINRLSIGIQSFNS HL ALGRIHDG 
Sbjct: 118 LRTLLPLDADIEITMEANPGTFEADKFRSYRDSGINRLSIGIQSFNSAHLQALGRIHDGG 177

Query: 181 QARKAVEIAHANFDNFNLDLMYALPQQTLAEAQADISTAIAFAPPHLSLYHLTLEPNTLF 240
           QA +AVEIAHANFDNFNLDLMYALPQQTL +A+ DI TAI FAPPHLSLYHLTLEPNTLF
Sbjct: 178 QAHQAVEIAHANFDNFNLDLMYALPQQTLEQARTDIQTAIDFAPPHLSLYHLTLEPNTLF 237

Query: 241 AKYPPPVPDEDASADMQDMIAELTTAAGYTNYEVSAYAQPKRRARHNLNYWQFGDYLGIG 300
           AK+PP VPDED SADMQDMI ELTT AGY NYEVSAYAQP RRARHNLNYWQFGDYLGIG
Sbjct: 238 AKFPPAVPDEDTSADMQDMIGELTTQAGYGNYEVSAYAQPGRRARHNLNYWQFGDYLGIG 297

Query: 301 AGAHSKLSFPHRIVRQMRYKHPQAYLDQARVGSPIQEEGEIGRDALGFEFMLNALRLTEG 360
           AGAHSKLSFPHRIVRQMRYKHPQAYL   + G+ IQEE EIGRDALGFEFMLNALRLTEG
Sbjct: 298 AGAHSKLSFPHRIVRQMRYKHPQAYLQHIKAGTHIQEEAEIGRDALGFEFMLNALRLTEG 357

Query: 361 FPPNLFAERTGMSLNQIEQQLNLAEQKGMLYRDHALIRPTELGRRFLNDLQEIFLS 416
           FPPNLFAERTG++LNQI +QL+LAE+KGMLYRDHALIRPT LGRRFLNDLQEIFLS
Sbjct: 358 FPPNLFAERTGLALNQIGKQLDLAERKGMLYRDHALIRPTPLGRRFLNDLQEIFLS 413


>gi|300312505|ref|YP_003776597.1| oxygen-independent
           coproporphyrinogen III oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 483

 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 9/251 (3%)

Query: 38  LAALPPLSLYVHFPWCVRKCPYCDFNSHEVKGSFPEDDYLAALRSDLEQSLPLIWG-RKI 96
           ++A   LSLY+H P+C   C YC  N    K       YL+ L+ ++     L  G  ++
Sbjct: 61  MSAWRALSLYLHIPFCDTICYYCACNKIVTKNRAKAALYLSYLKREISMQGSLFSGMNQV 120

Query: 97  HTIFIGGGTPSLLSAAGLDRLLSDLR---TLLPFDSDIEITMEANPGTFEADKFRSYRAS 153
             +  GGGTP+ LS   +  L+  +R   TL P D   E ++E +P T   ++    R  
Sbjct: 121 EQLHFGGGTPTYLSDEQMSDLMDHIRHCFTLAP-DHVGEYSIEIDPRTVSVERVHKLRQQ 179

Query: 154 GINRLSIGIQSFNSQHLHALGRIHDGDQARKAVEIAH-ANFDNFNLDLMYALPQQTLAEA 212
           G NR+S+G+Q F+ +   A+ R+   +Q  + +  A  A F + ++DL+Y LP+Q +   
Sbjct: 180 GFNRISLGVQDFDPEVQLAVNRVQSEEQTLEIIRAARDAGFRSVSIDLIYGLPKQNVMSM 239

Query: 213 QADISTAIAFAPPHLSLYHLTLEPNTLFAK---YPPPVPDEDASADMQDMIAELTTAAGY 269
              ++  IA +P  +++Y+    P     +       +P  D+  DM  +     T+AGY
Sbjct: 240 SRTLAKVIAASPDRIAVYNYAHMPQLFKTQRQIKEEDLPSADSKLDMLSLCIRQLTSAGY 299

Query: 270 TNYEVSAYAQP 280
               +  +A+P
Sbjct: 300 VYIGMDHFAKP 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,215,951
Number of extensions: 49312
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 329
Effective length of database: 1,203,190
Effective search space: 395849510
Effective search space used: 395849510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)