BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1980.p (202 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodie... 387 e-109 gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphod... 165 2e-42 gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodie... 155 2e-39 gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodie... 155 3e-39 gi|300312299|ref|YP_003776391.1| acyl carrier protein phosphodie... 82 2e-17 >gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 202 Score = 387 bits (994), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/202 (93%), Positives = 195/202 (96%) Query: 1 MSTLLHIDSSARSDGSISRQLTASFVQQWQAKNPGGKVVHRDLAANALPHLNESMLGAYF 60 MSTLLHIDSSARS GSISRQLTASFV QWQAKNPGGKVVHRDLAANALPHL+ESMLGAYF Sbjct: 1 MSTLLHIDSSARSGGSISRQLTASFVSQWQAKNPGGKVVHRDLAANALPHLSESMLGAYF 60 Query: 61 TPAEARSAEQAQVIQQSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFK 120 TPA+ARSAEQA+VI+QSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFK Sbjct: 61 TPADARSAEQAEVIKQSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFK 120 Query: 121 YTETGPVGLATGKKAVIILSRGGKYSEGPMEALDFQGKYLKGALGFIGITDVELVVAEGV 180 YTETGPVGL TGKKAVIILSRGG YSEGPMEALDFQGKYLK ALGFIGITDVELVVAEGV Sbjct: 121 YTETGPVGLVTGKKAVIILSRGGMYSEGPMEALDFQGKYLKSALGFIGITDVELVVAEGV 180 Query: 181 SMGEEAAKAAVAGAQAKINATV 202 SMGEEAAK AVA A+AKINA+V Sbjct: 181 SMGEEAAKQAVASAEAKINASV 202 >gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 203 Score = 165 bits (418), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 91/182 (50%), Positives = 117/182 (64%), Gaps = 2/182 (1%) Query: 4 LLHIDSSARSDGSISRQLTASFVQQWQAKNPGGKVVHRDLAANALPHLNESMLGAYFTPA 63 LLH+D+S + S+SRQL+A V ++ P +V++RDLAA A HL+ L A F A Sbjct: 3 LLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAA-FGGA 61 Query: 64 EARSAEQAQVIQQSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFKYTE 123 E + A +DELL AD +VIG PMYNF+ PS LKAWID V AG TF YT+ Sbjct: 62 EVDDPALRADLALGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTFAYTD 121 Query: 124 TGPVGLATGKKAVIILSRGGKYSEGPME-ALDFQGKYLKGALGFIGITDVELVVAEGVSM 182 GP GL G++A I RGG+Y+EG E ALD Q +YL+ LGF+GI DV +V AEGV+M Sbjct: 122 AGPEGLLKGRRAYIASVRGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAEGVAM 181 Query: 183 GE 184 G+ Sbjct: 182 GD 183 >gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 155 bits (392), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 124/201 (61%), Gaps = 3/201 (1%) Query: 4 LLHIDSSARSDGSISRQLTASFVQQWQAKNPGGKVVHRDLAANALPHLNESMLGAYFTPA 63 +LH+DSS ++ S SR L+A+ V++ + +P +V RDLAA + HL+ + + P Sbjct: 3 ILHLDSSILAEASASRVLSAAVVEELRILHPTAQVSVRDLAAAPIAHLDGPIAAGFRQPG 62 Query: 64 EARSAEQAQVIQQ-SDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFKYT 122 ++ + + Q S+ LV + L +D IV+GVPMYNF+ PS LKAW+D V + GRTF+YT Sbjct: 63 ANHASPEVRAEQALSETLVSQFLNSDVIVLGVPMYNFSIPSQLKAWLDRVAQPGRTFRYT 122 Query: 123 ETGPVGLATGKKAVIILS-RGGKYSEGPMEALDFQGKYLKGALGFIGITDVELVVAEGVS 181 E GP+GL +G+KAVII S RGG YS GP +D Q YLK GF+GI V V AE + Sbjct: 123 ENGPLGL-SGEKAVIIASTRGGMYSSGPAAVMDHQEAYLKAFFGFLGIERVRFVRAERLI 181 Query: 182 MGEEAAKAAVAGAQAKINATV 202 G E ++ A ++ + V Sbjct: 182 KGAELRSQSMRAALDEVPSVV 202 >gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 205 Score = 155 bits (391), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/198 (42%), Positives = 113/198 (57%), Gaps = 1/198 (0%) Query: 1 MSTLLHIDSSARSDGSISRQLTASFVQQWQAKNPGGKVVHRDLAANALPHLNESMLGAYF 60 M+ +L I SS R S+S + + +A + G V RDL A+ LPH+ + + Sbjct: 1 MTHVLLITSSPRGADSLSSRFATEIAEGIKASSAGTLKV-RDLIADPLPHITSAYIQGRL 59 Query: 61 TPAEARSAEQAQVIQQSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFK 120 T E R+ +Q + + LVDEL AAD +VIG M NF P S LKAW DHV TF Sbjct: 60 TAPENRTPDQVAAVALAQELVDELKAADIVVIGSGMINFGPSSQLKAWFDHVTWPSVTFA 119 Query: 121 YTETGPVGLATGKKAVIILSRGGKYSEGPMEALDFQGKYLKGALGFIGITDVELVVAEGV 180 Y + GP GL TGKK ++ + GG +SEG A DFQ YL L FIG++DVE+V EG Sbjct: 120 YDDNGPKGLLTGKKTYLVAAAGGVFSEGIWAAFDFQSNYLLHLLSFIGLSDVEMVCVEGT 179 Query: 181 SMGEEAAKAAVAGAQAKI 198 G +AAKAA+A +A + Sbjct: 180 VFGPDAAKAAIANTEAAV 197 >gi|300312299|ref|YP_003776391.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 82.4 bits (202), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 89/176 (50%), Gaps = 7/176 (3%) Query: 4 LLHIDSSARSDGSISRQLTASFVQQWQAKNPGGKVVHRDLAANALPHLNESMLGA---YF 60 +LHI+SS+R S S QLT F+++ + K+ +V DL + LP E +GA F Sbjct: 3 ILHINSSSRGADSRSLQLTEVFLRELE-KHKAIEVDRFDLFSGELPAFGELAVGAKMAMF 61 Query: 61 TPAEARSAEQAQVIQQSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFK 120 T AEA S EQ A+ D +AD VI VP++N P LK +ID V + G F Sbjct: 62 TGAEATS-EQKHAWASIKAVFDRFASADAYVINVPLWNNGLPYVLKQFIDVVTQPGWAFG 120 Query: 121 YT-ETGPVGLATGKKAVIILSRGGKYSEGPME-ALDFQGKYLKGALGFIGITDVEL 174 + E G GL +KA II + G + P DF YL L F+GI + ++ Sbjct: 121 FDLENGYSGLLKNRKACIIHASGVYHPGIPTNFGSDFSTPYLTDWLKFVGIEEADI 176 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 585,509 Number of extensions: 23785 Number of successful extensions: 84 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 5 Length of query: 202 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,236,335 Effective search space: 149596535 Effective search space used: 149596535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)