BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1975.p
         (418 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311437|ref|YP_003775529.1| signal transduction containing ...   792   0.0  
gi|300311452|ref|YP_003775544.1| signal transduction containing ...   107   2e-24

>gi|300311437|ref|YP_003775529.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/411 (94%), Positives = 398/411 (96%)

Query: 1   LIGYELLFRSAAFGPANVKDDVTATAAVIAHASELGLSNVIGNLHGFINVDAAVLMSDFI 60
           LIGYELLFRSAAFGPANVKDDVTATAAVIAHASELGLSNVIGNL GFINVDAAVLMSDFI
Sbjct: 32  LIGYELLFRSAAFGPANVKDDVTATAAVIAHASELGLSNVIGNLQGFINVDAAVLMSDFI 91

Query: 61  YFLPADKVVLEILETVRVTPELVARVRELVKAGYVFALDDVVAESQEIEELLPLVKIIKI 120
           YFLP DKVVLEILETVRVTPELV RVRELVKAGYVFALDDVVAESQEIEELLPLVKIIKI
Sbjct: 92  YFLPNDKVVLEILETVRVTPELVVRVRELVKAGYVFALDDVVAESQEIEELLPLVKIIKI 151

Query: 121 DVMEVDPSKLLKLSVHFKRARKELLAEKVETLQQFNDCMTFGFDFFQGYYFAKPMILQGK 180
           DVMEVDPSKLLKLSVHFKRA+KELLAEKVETLQQFNDC+TFGFD+FQGYYFAKPMILQGK
Sbjct: 152 DVMEVDPSKLLKLSVHFKRAQKELLAEKVETLQQFNDCVTFGFDYFQGYYFAKPMILQGK 211

Query: 181 KLEASKMIIMHLLTLLVRNVDNAEIVRYIKRDVALSLTLLRLVNTPVYGFQKFIDSLGQA 240
           KLEASKM+IMHLLTLLVRNVDN EIVR+IKRDVALSLTLLRLVNTPVYGFQKFIDSLGQA
Sbjct: 212 KLEASKMVIMHLLTLLVRNVDNGEIVRFIKRDVALSLTLLRLVNTPVYGFQKFIDSLGQA 271

Query: 241 LIVLGRRQLKRWLQILLFANTDKERAHTMSPLMILAATRGKMLELITAKIRPGRRKMSEM 300
           LIVLGRRQLKRWLQILLFANTDKE+AHTMSPLMILAATRGKMLELIT +IRPGRRKMSEM
Sbjct: 272 LIVLGRRQLKRWLQILLFANTDKEQAHTMSPLMILAATRGKMLELITTRIRPGRRKMSEM 331

Query: 301 AFTVGIMSLVDALFGMSMESVLRQITVSTEIREALLRRNGYYGSVLRLVECTELREPDQA 360
           AFTVGIMSLVDALFGMSME+VLRQITVSTEIREALLRR G+YG  LRLVECTE R+ DQA
Sbjct: 332 AFTVGIMSLVDALFGMSMETVLRQITVSTEIREALLRRTGFYGVALRLVECTEQRDQDQA 391

Query: 361 EMQRLLDELQLSADDFFAAEKHAFEWGNSISNNNIGGQASMQMSPPPEGYI 411
           EMQRLLDELQLSADDFF AEKHAFEWGNSISNNNIG QASM MSPPPEG+I
Sbjct: 392 EMQRLLDELQLSADDFFEAEKHAFEWGNSISNNNIGAQASMHMSPPPEGFI 442


>gi|300311452|ref|YP_003775544.1| signal transduction containing EAL
           and modified HD-GYP domains protein [Herbaspirillum
           seropedicae SmR1]
          Length = 399

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 176/366 (48%), Gaps = 22/366 (6%)

Query: 33  SELGLSNVIGNLHGFINV-DAAVLMSDFIYFLPADKVVLEILETVRVTPELVARVRELVK 91
           +E  L + +G L+  I V D A    +F    P  ++ L +     V P  +  +  L  
Sbjct: 48  NEFELHDALGGLNCIIPVSDPASFAPEFREQFPQGQLALRVPVEHCVDPARIDALDWLYS 107

Query: 92  AGYVFALDDVVAESQEIEELLPLVKIIKIDVMEVDPSKLLKLSVHFKRARKELLAEKVET 151
            G+    D + A+   +    P V+ I   V++    KL + +      R   LAE V  
Sbjct: 108 RGFSILADGLPAQGASV---FPFVESI---VLDASIGKLPETAQWLHGLRGPHLAENVAD 161

Query: 152 LQQFNDCMTFGFDFFQGYYFAKPMILQGKKLEASKMIIMHLLTLLVRNVDNAEIVRYIKR 211
             QF+ C   GF +F G Y   P     +K   S+  ++ LL L+ R+ D  E+   +K+
Sbjct: 162 AVQFDACRVQGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANELESLLKQ 221

Query: 212 DVALSLTLLRLVNTPVYGFQKFIDSLGQALIVLGRRQLKRWLQILLFANTDKERAHTMSP 271
           D ALS  L +LV++  +GF   I +  QA+ +LGRRQL+RWLQ+LL+A    +   + +P
Sbjct: 222 DPALSYQLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARFPGDE--SANP 279

Query: 272 LMILAATRGKMLELITAKIRPGRRKMSEMAFTVGIMSLVDALFGMSMESVLRQITVSTEI 331
           L+  AA R  M+E +   I   + ++ + AF  G+ SL+D L GM +  ++  + +  +I
Sbjct: 280 LLPRAAARAAMMEAMAQCIDCTQEEL-DRAFITGMFSLLDILLGMPLNDIIEPLKLPVDI 338

Query: 332 REALLRRNGYYGSVLRLVECTE-----LREPDQAEMQRLLDELQLSADDFFAAEKHAFEW 386
             AL+RR+G  G +L +VE +E     LR  D       LD   L A+ +      AF W
Sbjct: 339 VNALVRRSGRLGKLLDVVERSEDGRIPLRHSD-------LDAAGLDAEVYCRCLIQAFNW 391

Query: 387 GNSISN 392
              +S 
Sbjct: 392 ATRVST 397


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,097,433
Number of extensions: 40468
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 418
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,203,190
Effective search space: 397052700
Effective search space used: 397052700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)