BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1971.p
         (256 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311433|ref|YP_003775525.1| molybdate ABC transporter perip...   419   e-118
gi|300312151|ref|YP_003776243.1| molybdate ABC transporter perip...    74   1e-14

>gi|300311433|ref|YP_003775525.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score =  419 bits (1077), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/256 (84%), Positives = 232/256 (90%)

Query: 1   MFMKLRLKAALRTVCAATLILAAGAAQATDLVVSAAASLTNAFKELAQSFEQQHPGVKVI 60
           M  + RL  AL   CAATL+LAAGAAQA DLVVSAAASLTNAFKELAQSFEQQHPGVKV+
Sbjct: 1   MSTRSRLNTALGAACAATLMLAAGAAQAADLVVSAAASLTNAFKELAQSFEQQHPGVKVV 60

Query: 61  TNFGASDILMQQIVRGAPADVFASADQTAMDKAVAEKAVDAASRQNFAANQIVLIVPHDA 120
           +NFGASDILM+QIVRGAPADVFASADQTAMDKAVAEKAVD A+R+NFAANQIVLIV   +
Sbjct: 61  SNFGASDILMRQIVRGAPADVFASADQTAMDKAVAEKAVDPATRKNFAANQIVLIVTQGS 120

Query: 121 KQLPTSLADLTRAQYQRIALGNPASVPFGRYTKAALEQAGLWPQVQAKAVMAENVRTSLD 180
           +  PTSLADLT+  Y+RIALGNPASVPFGRYT+ ALEQAGLW QVQAK VMAENVRTSLD
Sbjct: 121 RLAPTSLADLTQPDYKRIALGNPASVPFGRYTRTALEQAGLWSQVQAKGVMAENVRTSLD 180

Query: 181 YVARGEVDAGFVFATDAAVMPEKVKVALRIPSDTPATYPIAVTSGSRQPALAAQFVAYVR 240
           YVARGE DAGFVFATDAA+MPEKVKVALR+PSD PATYPIAVT+GSRQPALAAQFVAYV 
Sbjct: 181 YVARGEADAGFVFATDAAIMPEKVKVALRLPSDQPATYPIAVTAGSRQPALAAQFVAYVL 240

Query: 241 SSSGQAVLARYGFLKP 256
           S +GQAVLARYGFLKP
Sbjct: 241 SPTGQAVLARYGFLKP 256


>gi|300312151|ref|YP_003776243.1| molybdate ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 73.6 bits (179), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 118/255 (46%), Gaps = 21/255 (8%)

Query: 11  LRTVCAAT--LILAAGAAQATDLVVSAAASLTNAFKELAQSFEQQHPGVKVITNFGASDI 68
           LRT+  A   L L      A ++ V+ AA+ T  FK++A +FEQ   G KV+  FG++  
Sbjct: 2   LRTLMLACTWLWLLMPVVHAEEVHVAVAANFTQPFKQIAAAFEQA-TGHKVVAAFGSTGQ 60

Query: 69  LMQQIVRGAPADVFASADQTAMDKAVAEKAVDAASRQNFAANQIVLIVPHDAKQLPTSLA 128
              QI  GAP ++  +AD         +K   A +R  +A  ++VL     AK     + 
Sbjct: 61  FYAQINNGAPFEILLAADADTPALLEKQKTAVAGTRFTYARGKLVL---WSAK---PGVV 114

Query: 129 D-----LTRAQYQRIALGNPASVPFGRYTKAALEQAGLWPQVQAKAVMAENVRTSLDYVA 183
           D     L +  ++ ++L NP   P+G      +++ GL   ++ K V AENV  +  ++A
Sbjct: 115 DAQGEILKKGAFEHLSLANPKLAPYGLAGVQTMQKLGLEEALRPKIVQAENVNQAYQFIA 174

Query: 184 RGEVDAGFVFATDAAVMPEKV--KVALRIPSDTPATY---PIAVTSGSRQPALAAQFVAY 238
            G    GFV A    V   ++    A  +P+D  A      + +  G   PA A   + Y
Sbjct: 175 SGNALLGFV-ALSQVVRNGQIADGSAWIVPADLYAPILQDAVLLEKGRDHPA-ALALMTY 232

Query: 239 VRSSSGQAVLARYGF 253
           ++S   + V+  YG+
Sbjct: 233 LKSEPARQVIRGYGY 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.128    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 646,562
Number of extensions: 23748
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 2
Length of query: 256
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,226,865
Effective search space: 212247645
Effective search space used: 212247645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)