BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1970.p (224 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 403 e-114 gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 132 2e-32 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 114 8e-27 gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permeas... 95 5e-21 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 69 2e-13 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 403 bits (1036), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/224 (91%), Positives = 216/224 (96%) Query: 1 MHPVWTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSPLRDFIDSVLTLPLVLPPTVMG 60 MHPVWTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRS LRDFIDSVLTLPLVLPPTV+G Sbjct: 1 MHPVWTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLG 60 Query: 61 YYLLVLFGRRGTFGAWLEGMGIQLVFTWQGAVLASTVVAFPLVLKAARAAFESVDQQLEN 120 YYLLVLFGRRG GAWLE MGI+LVFTWQGAVLASTVVAFPLVLK+ARAAFESVD Q+E+ Sbjct: 61 YYLLVLFGRRGALGAWLERMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMED 120 Query: 121 AARVLGVSEAGVFFRVSLPLATRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVA 180 AARVLGVSEAGVFFRVSLPLA RGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVA Sbjct: 121 AARVLGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVA 180 Query: 181 IYEAVQAGDDGAATLLVIITSLTCIVLLMIAGRLVPDRSQLRVR 224 IYEAVQAGDDG+ATLLV+ITS+TCIVLLM+AGRL PDR+Q ++R Sbjct: 181 IYEAVQAGDDGSATLLVVITSITCIVLLMVAGRLTPDRAQQQLR 224 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 132/213 (61%), Gaps = 4/213 (1%) Query: 5 WTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSPLRDFIDSVLTLPLVLPPTVMGYYLL 64 W+ + L+L +A + T+L L+LG A+ L+R RS R + +V+ LPLVLPP V+G+YLL Sbjct: 8 WSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLL 67 Query: 65 VLFGRRGTFGAWLEGMGIQLV-FTWQGAVLASTVVAFPLVLKAARAAFESVDQQLENAAR 123 VL G +G G + +G+ L+ F++ G VLAS + + P V++ + AFE+V ++ A Sbjct: 68 VLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAVGERPMEVAA 127 Query: 124 VLGVSEAGVFFRVSLPLATRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAIYE 183 L S FF V++PLA G + +L FA +GEFG LM+ GN+PG+T+ LS+ IY+ Sbjct: 128 TLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYD 187 Query: 184 AVQAGDDGAATLL---VIITSLTCIVLLMIAGR 213 V+A + A L +++ S ++++M GR Sbjct: 188 HVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGR 220 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 114 bits (284), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 4/219 (1%) Query: 5 WTPLLLSLKVAGLATLLNLVLGVAAAYGLSRWRSPLRDFIDSVLTLPLVLPPTVMGYYLL 64 W+ + L+L A +A LNLV GVAAA+ ++++ ++ + +++ LP + P + G + Sbjct: 76 WSAIKLTLITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSPVISGLIYV 135 Query: 65 VLFGRRGTFGAWLEGMGIQLVFTWQGAVLASTVVAFPLVLKAARAAFESVDQQLENAARV 124 +LFG +G G WL I+++F G VLA+ V FP V + +S + E AA V Sbjct: 136 LLFGLQGYLGPWLREHDIKILFAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALV 195 Query: 125 LGVSEAGVFFRVSLPLATRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAI--- 181 LG S F+ V+LP G++ GV+L ARA+GEFGA +V+G++ G T T+ + + Sbjct: 196 LGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTIPLQVEIL 255 Query: 182 YEAVQ-AGDDGAATLLVIITSLTCIVLLMIAGRLVPDRS 219 Y G A+LL + +T + +I RL S Sbjct: 256 YNEFNITGAFAVASLLAFLALVTLAIKSVIEWRLHQQHS 294 >gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 106/200 (53%) Query: 10 LSLKVAGLATLLNLVLGVAAAYGLSRWRSPLRDFIDSVLTLPLVLPPTVMGYYLLVLFGR 69 LS + + LN++ G A+ L R+R P + ID+++ LP LP V G L L+ + Sbjct: 79 LSFGASLIGAFLNVIFGGIVAWVLVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQ 138 Query: 70 RGTFGAWLEGMGIQLVFTWQGAVLASTVVAFPLVLKAARAAFESVDQQLENAARVLGVSE 129 G G L +GI++ FT G ++A T + P V++ + E +++LE AA LG S Sbjct: 139 NGWLGKLLAPLGIKVAFTPLGVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASR 198 Query: 130 AGVFFRVSLPLATRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAIYEAVQAGD 189 F RV P ++ G LAFARA GE+G+ + +AGN+P ++ + I ++ D Sbjct: 199 WQTFTRVIFPTVLPALLTGFALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQYD 258 Query: 190 DGAATLLVIITSLTCIVLLM 209 AT + ++ L VLL+ Sbjct: 259 YAGATAIAMVMLLVSFVLLL 278 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 8 LLLSLKVAGLATLLNLVLGVAAAYGLSRWRSPLRDFIDSVLTLPLVLPPTVMGYYLLVLF 67 L+ +L ++ T L + V L R R P + + ++LT PL P V+G+ +++L Sbjct: 76 LVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPLAFPGVVVGFMVIMLA 135 Query: 68 GRRGTFGAWLEGM-GIQLVFTWQ--GAVLASTVVAFPLVLKAARAAFESVDQQLENAARV 124 GR+G GA G+ G LVF + G L + P V+ AA E +D LE AAR Sbjct: 136 GRQGLIGALTNGLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARS 195 Query: 125 LGVSEAGVFFRVSLPLATRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAIYEA 184 LG V V LP +++ + FA ++G FG +A N+ L + IY Sbjct: 196 LGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAANI----DVLPMTIYNE 251 Query: 185 VQ--AGDDGAATLLVIITSLTCIVL 207 A AA+L +++ +T VL Sbjct: 252 FTGYANFATAASLSIVLGVITWAVL 276 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 656,413 Number of extensions: 24495 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 217 Number of HSP's successfully gapped: 12 Length of query: 224 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 142 Effective length of database: 1,231,600 Effective search space: 174887200 Effective search space used: 174887200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)