BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1969.p (220 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transport... 351 3e-98 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 148 4e-37 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 146 2e-36 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 143 9e-36 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 140 8e-35 >gi|300311431|ref|YP_003775523.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 222 Score = 351 bits (900), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 177/219 (80%), Positives = 194/219 (88%) Query: 1 VSVDLQIHKQLRAGDRIFDLDIALASHSQRIVLYGPSGSGKSLTLKAIAGLIRPDRGHIR 60 +S+DLQI KQL A DR F LD++L S SQRIVLYGPSG+GKSLTLKAIAGL+RPD G IR Sbjct: 1 MSLDLQIQKQLHASDRRFALDLSLVSASQRIVLYGPSGAGKSLTLKAIAGLMRPDSGRIR 60 Query: 61 VRGRTLFDSAEGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGLSRGSCNPRRPTGHPA 120 + GRTLF+S EGID+ VQ RNVAYLFQDYALFPHL+VAQNIAFGL+RG N RRP HPA Sbjct: 61 LNGRTLFNSNEGIDLPVQGRNVAYLFQDYALFPHLSVAQNIAFGLARGCFNLRRPAQHPA 120 Query: 121 VQRWLQAFELQAIAHSHPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQRMR 180 V +WL+AFEL IAHS PAQISGGQRQRVALARALVAEP++LLLDEPFSALDLSLR+RMR Sbjct: 121 VAKWLRAFELDDIAHSRPAQISGGQRQRVALARALVAEPDILLLDEPFSALDLSLRERMR 180 Query: 181 QELAELQTHLQVPMLLITHDPADVEALGQTVFELRDGQL 219 ELAELQ LQVPMLLITHDPADVEALGQTVFELRDG+L Sbjct: 181 AELAELQAQLQVPMLLITHDPADVEALGQTVFELRDGRL 219 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 148 bits (373), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 116/191 (60%), Gaps = 6/191 (3%) Query: 31 IVLYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSAEGIDVRVQERNVAYLFQDYA 90 + L GPSGSGK+ L+A+AGL P G I + R +FD A ++ +ERN+ +FQ YA Sbjct: 36 VALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEMPAEERNLGLVFQSYA 95 Query: 91 LFPHLTVAQNIAFGLSRGSCNPRRPTGHPA--VQRWLQAFELQAIAHSHPAQISGGQRQR 148 L+PH TVA N+A+GL + P+G A V+ L L + +P Q+SGGQ+QR Sbjct: 96 LWPHKTVADNVAYGLKL----RKTPSGEIATRVKAVLSQLGLGHLGERYPHQLSGGQQQR 151 Query: 149 VALARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHLQVPMLLITHDPADVEALG 208 VA+ARALV P+++LLDEP S LD LR+ R L EL L + L++THD + A+ Sbjct: 152 VAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVTHDQGEAMAIS 211 Query: 209 QTVFELRDGQL 219 + L +G++ Sbjct: 212 DRILLLNNGRI 222 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 146 bits (368), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 130/222 (58%), Gaps = 12/222 (5%) Query: 1 VSVDL-QIHKQLRAGDRIFD-LDIALASHSQRIVLYGPSGSGKSLTLKAIAGLIRPDRGH 58 VS+ L Q K G R LD+ + + +VL GPSG GK+ TL+ IAGL PD G Sbjct: 8 VSIRLSQCAKSFANGTRALQPLDLQI-HPGETLVLLGPSGCGKTTTLRMIAGLEFPDEG- 65 Query: 59 IRVRGRTLFDSAEGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGLS-RGSCNPRRPTG 117 GR LF + + +++R V +FQ+YALFP+++V +NIA+G+ R R Sbjct: 66 ----GRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAE- 120 Query: 118 HPAVQRWLQAFELQAIAHSHPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQ 177 V+R L+ LQ ++H Q+SGGQ+QRVALARAL EP +LLLDEP +ALD LR+ Sbjct: 121 --RVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLRE 178 Query: 178 RMRQELAELQTHLQVPMLLITHDPADVEALGQTVFELRDGQL 219 +R +L +L L + + +THD + ALG + + G++ Sbjct: 179 AVRSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKI 220 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 143 bits (361), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 122/216 (56%), Gaps = 11/216 (5%) Query: 8 HKQLRAGDRIFDLDIALASHSQRIV-LYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTL 66 H Q R G D++L + + L GPSG GK+ L+ IAGL PD G + L Sbjct: 7 HIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQV------L 60 Query: 67 FDSAEGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGLSRGSCNPRRPTG---HPAVQR 123 D + V+ER V ++FQ YALF H+TV +NIAFGL R +RP+ V+R Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGL-RVKPRSQRPSEAVIREKVKR 119 Query: 124 WLQAFELQAIAHSHPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQRMRQEL 183 L+ +L +A +P Q+SGGQRQR+ALARAL EP +LLLDEPF ALD +R+ +R+ L Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 184 AELQTHLQVPMLLITHDPADVEALGQTVFELRDGQL 219 L L V + +THD + + V + GQ+ Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQV 215 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 140 bits (353), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 122/221 (55%), Gaps = 23/221 (10%) Query: 6 QIHKQLRAGDRIFD----LDIALASHSQRIVLYGPSGSGKSLTLKAIAGLIRPDRGHIRV 61 Q+ K AG + D +D +A + IV+ GPSG GKS L+ +AGL G I + Sbjct: 8 QVRKTYGAGTKAVDVIHGIDAEIAD-GEFIVMVGPSGCGKSTLLRMVAGLEEISSGQIVI 66 Query: 62 RGRTLFDSAEGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGL-----SRGSCNPRRPT 116 R + D + +ER++A +FQ+YAL+PH+TV QN+A+GL S+ + R Sbjct: 67 GDRVVND------LEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDAR--- 117 Query: 117 GHPAVQRWLQAFELQAIAHSHPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLR 176 VQR EL A+ P Q+SGGQRQRVA+ RA+V +P + L DEP S LD LR Sbjct: 118 ----VQRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLR 173 Query: 177 QRMRQELAELQTHLQVPMLLITHDPADVEALGQTVFELRDG 217 +MR E+ +L L+ L +THD + LGQ + + G Sbjct: 174 VQMRLEIQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRG 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 660,651 Number of extensions: 25209 Number of successful extensions: 459 Number of sequences better than 1.0e-08: 122 Number of HSP's gapped: 288 Number of HSP's successfully gapped: 128 Length of query: 220 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 138 Effective length of database: 1,231,600 Effective search space: 169960800 Effective search space used: 169960800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)