BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1968.p
         (434 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillu...   890   0.0  
gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate ph...    92   1e-19

>gi|300311430|ref|YP_003775522.1| isocitrate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 434

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/434 (98%), Positives = 432/434 (99%)

Query: 1   MSTREQQIQALERDWAENPRWKGIKRNYSAADVVRLRGSLQIEHTLAKRGADKLWNLVHN 60
           MSTREQQIQALERDWAENPRWKGIKRNYSAADVVRLRGSLQIEHT+AKRGADKLWNLV+N
Sbjct: 1   MSTREQQIQALERDWAENPRWKGIKRNYSAADVVRLRGSLQIEHTIAKRGADKLWNLVNN 60

Query: 61  EPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK 120
           EPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK
Sbjct: 61  EPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPMVVK 120

Query: 121 RINNTFARADQIQWSEGRDDIDFFAPIVADAEAGFGGVLNAFELMKSMIEAGAAGVHFED 180
           RINNTFARADQIQWSEG+DDIDFFAPIVADAEAGFGGVLNAFELMKSMIEAGAAGVHFED
Sbjct: 121 RINNTFARADQIQWSEGKDDIDFFAPIVADAEAGFGGVLNAFELMKSMIEAGAAGVHFED 180

Query: 181 QLASVKKCGHMGGKVLVPTREACEKLNAARLAADVMGTKTLVIARTDAEAADLLTSDVDA 240
           QLASVKKCGHMGGKVLVPTREA EKLNAARLAADVMGTKTLVIARTDAEAADLLTSDVDA
Sbjct: 181 QLASVKKCGHMGGKVLVPTREAVEKLNAARLAADVMGTKTLVIARTDAEAADLLTSDVDA 240

Query: 241 NDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYADMVWCETGKPDLAFAKTFAEAIHA 300
           NDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYADMVWCETGKPDLAFAKTFAEAIHA
Sbjct: 241 NDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEYADMVWCETGKPDLAFAKTFAEAIHA 300

Query: 301 KFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHALNYSMFNLAH 360
           KFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHALNYSMFNLAH
Sbjct: 301 KFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHALNYSMFNLAH 360

Query: 361 GYARNQMSAFVELQEAEFAAAAKGFTAVKHQREVGTGYFDAVTQAIQQGQSSTTALHGST 420
           GYARNQMSAFVELQEAEFAAA KGFTAVKHQREVGTGYFDAVTQAIQQGQSSTTALHGST
Sbjct: 361 GYARNQMSAFVELQEAEFAAATKGFTAVKHQREVGTGYFDAVTQAIQQGQSSTTALHGST 420

Query: 421 EDEQFFDDKAKKAA 434
           EDEQFFDDKAKKAA
Sbjct: 421 EDEQFFDDKAKKAA 434


>gi|300312420|ref|YP_003776512.1| carboxyphosphonoenolpyruvate
           phosphonomutase [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 128/312 (41%), Gaps = 72/312 (23%)

Query: 58  VHNEPFVNALGALTGNQAMQQVKAGLKAIYLSGWQVAGDANLAGEM-YPDQSLYPANSVP 116
           V  E  +  +GA+  N A+   +AG +AIYLSG  VA     AG +  PD  +   + V 
Sbjct: 14  VQEESPLQVIGAINANHALLAKRAGFRAIYLSGGGVA-----AGSLGLPDLGISNLDDVL 68

Query: 117 MVVKRINNTFARADQIQWSEGRDDIDFFAPIVADAEAGFGG-VLNAFELMKSMIEAGAAG 175
             V+RI                D  D   P++ D + GFG    N    +KSMI+ GAA 
Sbjct: 69  TDVRRIT---------------DVCDL--PLLVDVDTGFGASAFNVARTVKSMIKFGAAA 111

Query: 176 VHFEDQLASVKKCGHMGGKVLVPTREACEKLNAARLAADVMGTKTLVI-ARTDAEAADLL 234
           +H EDQ+ + K+CGH   K +V  +E  +++ A   A D    +  VI ARTDA A +  
Sbjct: 112 MHIEDQVGA-KRCGHRPNKEIVSKQEMVDRIKA---AVDARTDENFVIMARTDALAVE-- 165

Query: 235 TSDVDANDKPFLSGERTVEGFFKTHPGIDQAISRGLAYAEY-ADMVWCETGKPDLAFAKT 293
                                     G+D AI R +A  E  ADM++ E    DLA  K 
Sbjct: 166 --------------------------GLDAAIERAVACVEAGADMIFPE-AITDLAMYKQ 198

Query: 294 FAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHALNY 353
           FA A+       +  +  +P F                EL           L+ F A+N 
Sbjct: 199 FANAVKVPILANITEFGSTPLFTVD-------------ELKGADVGLVLYPLSAFRAMNK 245

Query: 354 SMFNLAHGYARN 365
           +  N+     R+
Sbjct: 246 AAENVYQAIRRD 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,308,814
Number of extensions: 53669
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 434
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,203,190
Effective search space: 416303740
Effective search space used: 416303740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)