BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1966.p
         (166 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311428|ref|YP_003775520.1| S-adenosylmethionine:2-demethyl...   303   6e-84
gi|300313736|ref|YP_003777828.1| demethylmenaquinone methyltrans...    66   2e-12
gi|300313743|ref|YP_003777835.1| 2-demethylmenaquinone methyltra...    54   9e-09

>gi|300311428|ref|YP_003775520.1|
           S-adenosylmethionine:2-demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 163

 Score =  303 bits (775), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 147/162 (90%), Positives = 155/162 (95%)

Query: 5   SFATCDLCDTNEDKLAAGTLHVLPPIFASFGRKQAFAGPAKTLKVFEDNVMVRATLETPG 64
           +FATCDLCD +EDKLAAGTLHVLPPIFASFGRKQ+F GPA+TLKVFEDNV+VRATLETPG
Sbjct: 2   TFATCDLCDAHEDKLAAGTLHVLPPIFASFGRKQSFCGPARTLKVFEDNVLVRATLETPG 61

Query: 65  HGQVLVVDGGGSLRCALVGANLAQLAQDNGWAGILVNGCVRDAVELNACEVGIRALATHP 124
            G VLVVDGGGSLRCALVG NLAQLAQDNGWAGILVNGCVRDA ELNACEVGIRALATHP
Sbjct: 62  QGHVLVVDGGGSLRCALVGGNLAQLAQDNGWAGILVNGCVRDAAELNACEVGIRALATHP 121

Query: 125 QRSFRKGAGDADIKVGIAGVSVHPGDWIYADVDGVLVSRTPL 166
           QRSFRKGAGDADIKVGIAGV+V+PGDWIYADVDGVLVSR+ L
Sbjct: 122 QRSFRKGAGDADIKVGIAGVAVYPGDWIYADVDGVLVSRSAL 163


>gi|300313736|ref|YP_003777828.1| demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score = 65.9 bits (159), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 40  FAGPAKTLKVFE-DNVMVRATLETPGHGQVLVVDGGGSLRCALVGANLAQLAQDNGWAGI 98
            AGPA T++V   DN+M+ A +     G VLV+DG G   CAL+G  +    + +G AGI
Sbjct: 53  VAGPAVTVEVRPGDNLMIHAAMAIAKPGDVLVIDGKGDETCALMGEIMVSQCKASGLAGI 112

Query: 99  LVNGCVRDAVELNACEVGIRALATHPQRSFRKGAGDADIKVGIAGVSVHPGDWIY 153
           ++ G VRD   +      + A+  +P    +  AG  +  + + G +V PGD I 
Sbjct: 113 IIYGSVRDIEAIREIGFPVYAVGANPNGPTKNIAGRVNWPISVGGTAVQPGDLIV 167


>gi|300313743|ref|YP_003777835.1| 2-demethylmenaquinone
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score = 53.5 bits (127), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 40  FAGPAKTLKVFE-DNVMVRATLETPGHGQVLVVDGGGSLRCALVGANLAQLAQDNGWAGI 98
            AGPA T+     DN+++   +     G VLVVD    +     G  L  LA   G AG+
Sbjct: 41  LAGPALTVDARPGDNLVLHYAVLQAKPGDVLVVDAKAFMEAGPWGDVLTVLAMKKGIAGL 100

Query: 99  LVNGCVRDAVELNACEVGIRALATHPQRSFRKGAGDADIKVGIAGVSVHPGDWIYADVDG 158
           +VNGCVRDA  +      +       + + +   G  ++ + I  V +HPGD I  D DG
Sbjct: 101 VVNGCVRDANTIIDLGFPVFCRGLSIKGTGKHQPGKVNVPIVIGDVLIHPGDIIVGDRDG 160

Query: 159 VLV 161
           + V
Sbjct: 161 LAV 163


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 581,296
Number of extensions: 23901
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 88
Effective length of database: 1,250,540
Effective search space: 110047520
Effective search space used: 110047520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)