BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1960.p
         (735 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311422|ref|YP_003775514.1| fusaric acid resistance membran...  1337   0.0  

>gi|300311422|ref|YP_003775514.1| fusaric acid resistance membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 734

 Score = 1337 bits (3461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/735 (91%), Positives = 700/735 (95%), Gaps = 1/735 (0%)

Query: 1   MTPPTLPLKAQLREAASDWWRSEAPTWVYVFKMVFAGLLALGIGYGLDLESPRSALITVF 60
           M+ P LP KA+LREAA+DWWRS+APTWVYVFKMV AGLLALGIGYGLDLESPRSALITVF
Sbjct: 1   MSNPALPFKAKLREAAADWWRSDAPTWVYVFKMVLAGLLALGIGYGLDLESPRSALITVF 60

Query: 61  IVMQPQSGMILAKSFYRVIGTLVGSAAIVLFVDLFAQTPELFLLASALWIGLCTVGSAHY 120
           IVMQPQSGMILAKSFYRVIGTLVGS AIV+FV LFAQTPELFLLASALWIGLCTVGSAH 
Sbjct: 61  IVMQPQSGMILAKSFYRVIGTLVGSMAIVVFVGLFAQTPELFLLASALWIGLCTVGSAHN 120

Query: 121 RNFRSYGFVLSGYTVALIGLPAALHPATTFDSVMTRVTEIMVGIVCVGLVSALVFPQASA 180
           RNFRSYGFVLSGYTVALIGLPAALHPA TFDSVMTRVTEIMVGIVCVGLVSALVFPQASA
Sbjct: 121 RNFRSYGFVLSGYTVALIGLPAALHPAITFDSVMTRVTEIMVGIVCVGLVSALVFPQASA 180

Query: 181 PSLVRIIRGRFTAFVDLVSATLGGTADRQQLEATNARFVGDIIGLEALRSAAIFEDPEVR 240
           P LVRIIRGRFTAFVDL+SATLGG+ADR+QLEATNARFVGDIIGLEA+RSAAIFEDPEVR
Sbjct: 181 PGLVRIIRGRFTAFVDLISATLGGSADRKQLEATNARFVGDIIGLEAMRSAAIFEDPEVR 240

Query: 241 VRSGRLTRMNSEFMALSTRVHALHQLMNRLHANPAPSAQVVIAAISPYFRQVQPLLTRAS 300
           +RSGRLTRMNSEFMALSTR+HALHQLMNRLHANPA SAQVVI AISPYFR+VQPLLTRAS
Sbjct: 241 LRSGRLTRMNSEFMALSTRMHALHQLMNRLHANPAASAQVVIDAISPYFREVQPLLTRAS 300

Query: 301 GEPVMSAVDAADAALKLDAFKHELPRRVRATRGTLADQCQSDSALLDFDTASELLYRVIE 360
           GEPVMSA+DAADAALKLDA+K ELPRRVRATR TLA QCQSDSA+LDFDTASELLYRVIE
Sbjct: 301 GEPVMSALDAADAALKLDAYKRELPRRVRATRSTLAGQCQSDSAMLDFDTASELLYRVIE 360

Query: 361 ELHAYTLTYASLNQRHHEREQWEHSYAPKTSMTTALIAGARAALVMLGLSAFWIASGWPS 420
           ELHAYTLTYAS+ QRHHEREQWEHSYAPKTSMTTALIAGARAA+VML L+ FWIASGWPS
Sbjct: 361 ELHAYTLTYASMTQRHHEREQWEHSYAPKTSMTTALIAGARAAVVMLCLAGFWIASGWPS 420

Query: 421 GDVAVLNAAAFCAITSAAPDPAKATRTVVIGVLFAAVAGYIYTFHILPRLDGYWMLASAL 480
           GDVAVLNAAAFCAITSAAPDPAKATRTV IGVLFAAVAGY+YTFHILPRLDGYWMLASAL
Sbjct: 421 GDVAVLNAAAFCAITSAAPDPAKATRTVAIGVLFAAVAGYVYTFHILPRLDGYWMLASAL 480

Query: 481 TPVLMLAVLLTTKPKWAGHGLGICIFFPFLAVPDNFAHFNAAGYINESVALVVSLLVTAV 540
            PVLMLAV LTTKPKWAG+GLGICIFFPFLAVPDNFAHFNAAGY+NESVALVVSLLVTAV
Sbjct: 481 MPVLMLAVYLTTKPKWAGYGLGICIFFPFLAVPDNFAHFNAAGYLNESVALVVSLLVTAV 540

Query: 541 AFMVLLPPTTDWTVRVLEKQLRKQVVDACFGKLGHLALKFESGTRDLMHQITLFTGSRPL 600
           AFMVLLPPTTDWTVRVLEKQLRKQVVDACFGKL HLALKFESGTRDLMHQIT+FT SRPL
Sbjct: 541 AFMVLLPPTTDWTVRVLEKQLRKQVVDACFGKLAHLALKFESGTRDLMHQITMFTTSRPL 600

Query: 601 LRQKALGWMFATLEVGHAIIELRTELHGIRTETPDLLPASAYAALNRLRQTIPALFAEPS 660
           LRQKALGWMFATLEVGHAIIELR ELHGIRTE PDLLPASAYAALNRLR+ IPALFA+PS
Sbjct: 601 LRQKALGWMFATLEVGHAIIELRNELHGIRTEAPDLLPASAYAALNRLREAIPALFAQPS 660

Query: 661 VATLEAALAANDATIVEVQTTIGPHYRERSERHRLQRTLSYLHFIRTALLDEQSPLHTMR 720
             TL +ALAANDATI EVQT IGPHYRERSERHRLQRTLSYLHFIRTALLDEQSPLHTMR
Sbjct: 661 ATTLASALAANDATIAEVQTAIGPHYRERSERHRLQRTLSYLHFIRTALLDEQSPLHTMR 720

Query: 721 AGGAKTNTTGAHHAT 735
           A GA  NTTG  HAT
Sbjct: 721 A-GATNNTTGERHAT 734


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,138,068
Number of extensions: 83579
Number of successful extensions: 421
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 643
Effective length of database: 1,184,250
Effective search space: 761472750
Effective search space used: 761472750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)