BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1955.p
         (429 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311419|ref|YP_003775511.1| capsule biosynthesis protein [H...   799   0.0  

>gi|300311419|ref|YP_003775511.1| capsule biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 429

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/429 (91%), Positives = 408/429 (95%)

Query: 1   MKTSCTLQVYIDGAWRQAGALSLTAPVELGMAASTYFIYDAVHSIDYMGRRDAAALSVNL 60
           MKTSCTL+V+IDGAWRQAG L+LTA VE GMAAST+F Y+ VH+IDY+GRRDAAALSVNL
Sbjct: 1   MKTSCTLEVHIDGAWRQAGGLALTAAVEQGMAASTFFAYETVHAIDYLGRRDAAALSVNL 60

Query: 61  PVSFESLSEARWPACLIDLLPQGYGRGELLRQLGLDERTEASADWPLLCAGAGNPIGNIR 120
           PV+ ++LSE RWPA LIDLLPQGYGR ELLRQLGLDERTEASADWPLLCAGAGNPIGNIR
Sbjct: 61  PVALDNLSEPRWPAFLIDLLPQGYGRAELLRQLGLDERTEASADWPLLCAGAGNPIGNIR 120

Query: 121 VLEAWEWAQARSAPQLRGFAVEEIAARSEDFNEYLAQHGLFLAGSSGVQGEWPKILLTRA 180
           VLEAWEW QARSAPQLRGFA+EEIAARSEDFNEYLAQHGLFLAGSSGVQGEWPKILLTRA
Sbjct: 121 VLEAWEWVQARSAPQLRGFAMEEIAARSEDFNEYLAQHGLFLAGSSGVQGEWPKILLTRA 180

Query: 181 RDGLFYLDHALPDELAERHYIVKFGRGPDPDLADILRLEAPYMKLAAHLGLNVHAVLELH 240
           RDGLFYLDHALPDELAERHYIVKFGRGPDPDLADILRLEAPYM++AA LGL+VHA LELH
Sbjct: 181 RDGLFYLDHALPDELAERHYIVKFGRGPDPDLADILRLEAPYMQMAARLGLHVHAPLELH 240

Query: 241 GKALFIPRFDREVRGAQVLRHAQESIASLCGVTGFAATPTHNAACARLGEVATDPVTEII 300
           GKALFIPRFDREVRG QVLRHAQESIASLCGVTGFAA PTHNA CARLGEVATDPVTEII
Sbjct: 241 GKALFIPRFDREVRGTQVLRHAQESIASLCGVTGFAAMPTHNAVCARLGEVATDPVTEII 300

Query: 301 EYLKRDIANIVLRNKDNHARNTAIRRDAQGQIGLTPLFDFAPMWLHPDGIARRMRWERDD 360
           EYLKRDIANIVLRNKDNHARNTAIRRDAQG++GLTPLFDFAPMWLHPDGIARRMRWERDD
Sbjct: 301 EYLKRDIANIVLRNKDNHARNTAIRRDAQGRVGLTPLFDFAPMWLHPDGIARRMRWERDD 360

Query: 361 GGSPQWASAIEQACEAAQIDQGPVKSAVREMAWPLTDLLDHGRSLGIEPTFLDPLAATVA 420
           GGSPQWASAI QACEAAQID GPVKSAVREMA PL DLLD+GRSLGIE  FLDPLAATVA
Sbjct: 361 GGSPQWASAIAQACEAAQIDPGPVKSAVREMALPLADLLDYGRSLGIESNFLDPLAATVA 420

Query: 421 QVRAQLEAL 429
           QVRAQLEAL
Sbjct: 421 QVRAQLEAL 429


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,478,530
Number of extensions: 66673
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,203,190
Effective search space: 410287790
Effective search space used: 410287790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)