BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1954.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311418|ref|YP_003775510.1| NRAMP family Mn2+/Fe2+ transpor...   843   0.0  

>gi|300311418|ref|YP_003775510.1| NRAMP family Mn2+/Fe2+ transporter
           protein [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/448 (95%), Positives = 441/448 (98%)

Query: 1   LPFTFRFPRIPGLPTTATAPFCPSEVSGSVPVPPTASVWQKLRIYVGPGLLVSIGYMDPG 60
           +PFTFRFPRIPGLPTTATAPFCPSEV+G+V VP  ASVWQKLRIYVGPGLLVSIGYMDPG
Sbjct: 1   MPFTFRFPRIPGLPTTATAPFCPSEVAGTVQVPRGASVWQKLRIYVGPGLLVSIGYMDPG 60

Query: 61  NWATSIQAGSQFGYQLLFVVMLSSLAAIVLQCLCARLGIATGKDLAVHSRQHYPPAVGKG 120
           NWATSIQAG+QFGYQLLFVVMLSSLAAIVLQCLCARLGIATGKDLAVHSR+HYPPAVGKG
Sbjct: 61  NWATSIQAGAQFGYQLLFVVMLSSLAAIVLQCLCARLGIATGKDLAVHSREHYPPAVGKG 120

Query: 121 MWVLAELSIIACDLAEVLGCALAFNLLLGVSLPVGVLLTALDTLIVLGLKGRGFRQVEAI 180
           MWVLAELSIIACDLAEVLGCALAFNLLLGVSLPVGVLLTALDTLIVLGLKGRGFRQVEAI
Sbjct: 121 MWVLAELSIIACDLAEVLGCALAFNLLLGVSLPVGVLLTALDTLIVLGLKGRGFRQVEAI 180

Query: 181 ILGLVLTIAACLLAQLAFVKADWQEVMQGFVPSLQAISSREPLYLAIGIIGATVMPHNLY 240
           ILGLV+TIAACLLAQLAFVKADW EVMQGFVPSLQAISSREPLYLAIGIIGATVMPHNLY
Sbjct: 181 ILGLVITIAACLLAQLAFVKADWHEVMQGFVPSLQAISSREPLYLAIGIIGATVMPHNLY 240

Query: 241 LHSSIVQTRSVRRDPASLLEAVRYTRVDTTVSLLIAMVINATILILAAAAFHKSGNTQVA 300
           LHSSIVQTRSV+RDPASLLEAVRYTRVDTTVSLLIAMVINATILILAAAAFHKSGNTQVA
Sbjct: 241 LHSSIVQTRSVQRDPASLLEAVRYTRVDTTVSLLIAMVINATILILAAAAFHKSGNTQVA 300

Query: 301 ELDQAYHLLDPITGSALAAILFGVGLFASGQSSTFTGTIAGQVIMEGFLKLKIPCWQRRI 360
           ELD+AYHLLDPITGSA+AAILFGVGLFASGQSSTFTGTIAGQVIMEGFLKLKIPCWQRR+
Sbjct: 301 ELDEAYHLLDPITGSAMAAILFGVGLFASGQSSTFTGTIAGQVIMEGFLKLKIPCWQRRV 360

Query: 361 ITRALALVPALIGVLTLGPHSVGKLLVASQVVLSLQLPFAMYPLIRLTSRRDLMGDLVNR 420
           ITRALALVPALIGVLTLGPHSVGKLLVASQVVLSLQLPFAMYPLIRLTSRRDLMGDLVNR
Sbjct: 361 ITRALALVPALIGVLTLGPHSVGKLLVASQVVLSLQLPFAMYPLIRLTSRRDLMGDLVNR 420

Query: 421 WWVSAVAWGLFVAISAANVWLVWQVFAD 448
           WWVS +AW LF AISAANVWLVWQVFAD
Sbjct: 421 WWVSGLAWVLFAAISAANVWLVWQVFAD 448


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,263,260
Number of extensions: 47305
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)