BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1949.p
         (427 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis prot...   755   0.0  
gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA...   249   2e-67

>gi|300311413|ref|YP_003775505.1| molybdopterin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 425

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/426 (88%), Positives = 397/426 (93%), Gaps = 6/426 (1%)

Query: 2   SSHSTPANAPEQPARAPMQSVSQALDILLAAAVPVEQSETIDTLDACGRVLAAPVQAHIN 61
           +S + P++A  +PARAPMQSVSQAL+ LL+AAVPV Q E IDTLDAC RVLA PV A I+
Sbjct: 6   NSSTPPSSA--KPARAPMQSVSQALETLLSAAVPVAQREIIDTLDACERVLAEPVTASID 63

Query: 62  VPGMDNSQMDGYAVRAVDCVSGDTRLRVSQRIPAGHVGQALEPGTAARIFTGAMMPEGAD 121
           VPGMDNSQMDGYAVRA DC SG  RLRVSQRIPAGHVGQ LEPGTAARIFTGAMMP GAD
Sbjct: 64  VPGMDNSQMDGYAVRAADCASGQARLRVSQRIPAGHVGQPLEPGTAARIFTGAMMPAGAD 123

Query: 122 AVVMQEACEADGEHVVIRHVPKAGEWVRTIGEDIRQGSIILAAGTRLRAQELGLAASIGQ 181
           AVVMQEACEADGEHVVIRHVP AGEWVRTIGEDIRQGS ILAAGTRLR QELGLAASIGQ
Sbjct: 124 AVVMQEACEADGEHVVIRHVPAAGEWVRTIGEDIRQGSTILAAGTRLRPQELGLAASIGQ 183

Query: 182 AQLQVVRPVRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQQLGCQVSDYGIVPDS 241
           AQLQV+R VRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQ+LGCQVSD+GIVPDS
Sbjct: 184 AQLQVLRRVRVAVFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQKLGCQVSDFGIVPDS 243

Query: 242 LEATRQTLREAAREHDLIITSGGVSVGEEDHVKPAVQAEGRIKLWQIAMKPGKPLAFGQV 301
           L+ATR+TLREAAREHDLIITSGGVSVGEEDHVKPAV+AEGRI +WQIAMKPGKPLAFGQV
Sbjct: 244 LQATRETLREAAREHDLIITSGGVSVGEEDHVKPAVEAEGRINMWQIAMKPGKPLAFGQV 303

Query: 302 RRGQGVGEGGSEAFFLGLPGNPVASFVTFLLFVRPFLLRLQGLPREAVLPQPVAMRADFD 361
           RRG+G G    EAFF+GLPGNPV+SFVTFLLFVRPFLLRLQGLPREAVLPQ VA+RADFD
Sbjct: 304 RRGEGTG----EAFFMGLPGNPVSSFVTFLLFVRPFLLRLQGLPREAVLPQAVALRADFD 359

Query: 362 WPRADRRQEFLRVRRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGDMVQFLA 421
           WPRADRRQEFLRVRRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGDMVQFLA
Sbjct: 360 WPRADRRQEFLRVRRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGDMVQFLA 419

Query: 422 FDHLLH 427
           FDHLL+
Sbjct: 420 FDHLLN 425


>gi|300311207|ref|YP_003775299.1| molybdopterin biosynthesis MoeA
           protein [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  249 bits (637), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/406 (41%), Positives = 227/406 (55%), Gaps = 27/406 (6%)

Query: 35  PVEQSETIDTLDACGRVLAAPVQAHINVPGMDNSQMDGYAVRAVDCVSG-DTRLRVSQRI 93
           P+E  E +    A  RVLA  + + I+VP  DNS MDGYA+R  D   G + RL++   +
Sbjct: 36  PIEAVEKLPIRSALSRVLAQDIVSRIDVPAHDNSAMDGYALRGEDLAEGRELRLQIIGEV 95

Query: 94  PAG--HVGQALEPGTAARIFTGAMMPEGADAVVMQE-ACEADGEHVVIRHVP----KAGE 146
            AG    GQ + PG   RI TGA MP G D V+ QE   +AD   V    VP    +AG+
Sbjct: 96  HAGDRFTGQ-VGPGQCVRIMTGAPMPAGCDTVIPQELTVDADQSAVT---VPPGRVRAGD 151

Query: 147 WVRTIGEDIRQGSIILAAGTRLRAQELGLAASIGQAQLQVVRPVRVAVFFTGDELTMPGQ 206
             R  GED+  GS+ L  G  LR  ++GL AS+G A+  V R +RVA F TGDEL   G+
Sbjct: 152 NRRLRGEDLALGSVALPRGRILRPSDIGLLASLGLAEAPVQRRLRVAFFSTGDELRSVGE 211

Query: 207 PLKPGGIYNSNRFLLRGLLQQLGCQVSDYGIVPDSLEATRQTLREAAREHDLIITSGGVS 266
           PL  G +Y+SNR+ L G+L +LGC+V D G+VPD   A     R A  E D +ITSGGVS
Sbjct: 212 PLDEGCVYDSNRYTLHGMLTRLGCEVLDMGVVPDDPAALEAAFRSACEEADAVITSGGVS 271

Query: 267 VGEEDHVKPAVQAEGRIKLWQIAMKPGKPLAFGQVRRGQGVGEGGSEAFFLGLPGNPVAS 326
           VG  D+ K  + + G +  W+IAM+PG+PLAFG++R        G EA+  GLPGNPVA 
Sbjct: 272 VGAADYTKQIMASLGEMAFWKIAMRPGRPLAFGRIR------SRGREAYLFGLPGNPVAV 325

Query: 327 FVTFLLFVRPFLLRLQG-----LPREAVLPQPVAMRADFDWPRADRRQEFLRVRRNAQGG 381
            V+F  FVR  LLRL G     LPR  V     A+R      R + ++  L    +    
Sbjct: 326 TVSFSFFVRDALLRLAGAEAKPLPRLRV-KTATAIRKKAG--RTEYQRGILAPDDSGNWS 382

Query: 382 LDLFPSQGSAVLTSTAWADGLIDNPPGQ-TIAAGDMVQFLAFDHLL 426
           + L   QGS +L S + A+ +I+    +  +AAG+ V  + FD L+
Sbjct: 383 VRLTGMQGSGILRSMSDANCIIELEHDRGDVAAGEEVAVVLFDGLV 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,324,669
Number of extensions: 53817
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 339
Effective length of database: 1,203,190
Effective search space: 407881410
Effective search space used: 407881410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)