BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1948.p
         (486 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311412|ref|YP_003775504.1| threonine synthase [Herbaspiril...   971   0.0  

>gi|300311412|ref|YP_003775504.1| threonine synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 486

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/486 (95%), Positives = 478/486 (98%)

Query: 1   MHYVSTRGHAATPSFSDILLGGLAPDGGLYLPAQYPQVSGAELDQWRKLSYADLAFEVLK 60
           M YVSTRGHAATPSFS+ILLGGLAPDGGLYLPAQYPQVSGAELDQWRKLSYADLAFEVL+
Sbjct: 1   MQYVSTRGHAATPSFSEILLGGLAPDGGLYLPAQYPQVSGAELDQWRKLSYADLAFEVLR 60

Query: 61  KFATDIPDADLKALAHKTYTADVYRNTRAGEDASQITPLRTLQEQDGKKLVLQSLSNGPT 120
           KFATDIP+ADLKALAHKTYTADVYRNTRAGE A++ITPLRTL+EQ GKKLVLQSLSNGPT
Sbjct: 61  KFATDIPEADLKALAHKTYTADVYRNTRAGEHAAEITPLRTLEEQGGKKLVLQSLSNGPT 120

Query: 121 LAFKDMAMQLLGNLFEYALAKKGAELNIVGATSGDTGSAAEYAMRGKQGIRVFMLSPHKK 180
           LAFKDMAMQLLGNLFEYALAK+GAELNIVGATSGDTGSAAEYAMRGK+GIRVFMLSPHKK
Sbjct: 121 LAFKDMAMQLLGNLFEYALAKQGAELNIVGATSGDTGSAAEYAMRGKKGIRVFMLSPHKK 180

Query: 181 MSAFQTAQMFSLQDPNIFNLAVEGVFDDCQDIVKAISNDLEYKAAKKIGTVNSINWARVV 240
           MSAFQTAQMFSLQDPNIFNLA+EGVFDDCQDIVKAISNDLEYKAAKKIGTVNSINWARVV
Sbjct: 181 MSAFQTAQMFSLQDPNIFNLAIEGVFDDCQDIVKAISNDLEYKAAKKIGTVNSINWARVV 240

Query: 241 AQVVYYFRGYLAATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNENDVLD 300
           AQVVYYFRGYLAATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNENDVLD
Sbjct: 241 AQVVYYFRGYLAATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNENDVLD 300

Query: 301 EFFRTGIYRVRKSAETYHTSSPSMDISKASNFERFIYDLLGRDSTRVKALFHKVETEGGF 360
           EFFRTGIYRVRKSAETYHTSSPSMDISKASNFERF+YDLLGRDS RVK LFHKVET GGF
Sbjct: 301 EFFRTGIYRVRKSAETYHTSSPSMDISKASNFERFVYDLLGRDSARVKDLFHKVETAGGF 360

Query: 361 DLSGQAGSDGNEFASVIQYGFASGKSTHADRLETIRFAEKTYGITVDTHTADGIKVAREH 420
           DLSGQAGSDGNEF SVIQYGFASG+STHADRLETIRFAEKTYGITVDTHTADGIKVAREH
Sbjct: 361 DLSGQAGSDGNEFTSVIQYGFASGRSTHADRLETIRFAEKTYGITVDTHTADGIKVAREH 420

Query: 421 LAPGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEALPQRFEVMPADAARVKAYV 480
           L PGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEALPQRFEVMPADAARVKAYV
Sbjct: 421 LTPGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEALPQRFEVMPADAARVKAYV 480

Query: 481 AEHTGL 486
           A+HTGL
Sbjct: 481 AQHTGL 486


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,464,558
Number of extensions: 60147
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,198,455
Effective search space: 475786635
Effective search space used: 475786635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)