BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1946.p
         (436 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311410|ref|YP_003775502.1| homoserine dehydrogenase [Herba...   813   0.0  

>gi|300311410|ref|YP_003775502.1| homoserine dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 436

 Score =  813 bits (2101), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/435 (93%), Positives = 422/435 (97%)

Query: 1   MKSIKVGLLGIGTVGSGTFNVLQRNQEEIARRAGRGIEITMVAARNTARATELTQGKVKV 60
           MKSIKVGLLGIGTVGSGTFNVL+RNQEEIARRAGRGIEITMVA  NT RATELT G+VKV
Sbjct: 1   MKSIKVGLLGIGTVGSGTFNVLKRNQEEIARRAGRGIEITMVADLNTERATELTNGEVKV 60

Query: 61  VNDGNLVVNDPEIDIVVELIGGYDTARDLVMKAIANGKHVVTANKALIATHGNEIFKAAR 120
           VND NLVV++P+IDIV+ELIGGY  A+DLV+KAIANGKHVVTANKALIATHGNEIFKAA+
Sbjct: 61  VNDANLVVSNPDIDIVIELIGGYGIAKDLVLKAIANGKHVVTANKALIATHGNEIFKAAQ 120

Query: 121 EKGVIVAFEAAVAGGIPIIKALREGLTANRIQWVAGIINGTTNFILSEMRDKGLDFDVVL 180
           EKGV+VAFEAAVAGGIPIIKALREGLTANRIQW+AGIINGTTNFILSEMRDKGLDFDVVL
Sbjct: 121 EKGVMVAFEAAVAGGIPIIKALREGLTANRIQWIAGIINGTTNFILSEMRDKGLDFDVVL 180

Query: 181 KEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQFDKAYVEGITKLQASDITYAE 240
           KEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQFDKA+VEGITKLQASDITYAE
Sbjct: 181 KEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQFDKAHVEGITKLQASDITYAE 240

Query: 241 QLGYRIKLLGITRQTAKGIELRVHPTLIPASRLIANVEGAMNAVVVRGDAVGEALYYGKG 300
           QLGYRIKLLGITRQTAKGIELRVHPTLIPA+RLIANVEGAMNAVVVRGDAVGE LYYGKG
Sbjct: 241 QLGYRIKLLGITRQTAKGIELRVHPTLIPAARLIANVEGAMNAVVVRGDAVGETLYYGKG 300

Query: 301 AGSEPTASAVIADLVDITRLATADPEHHVPSLAFQLNAMADTPVLPMSEVVTSYYLRIRV 360
           AGSEPTASAVIADLVDITRLATADPEH VP LAFQ NAMADTPVLPMSEV TSYYLR+RV
Sbjct: 301 AGSEPTASAVIADLVDITRLATADPEHRVPYLAFQPNAMADTPVLPMSEVSTSYYLRMRV 360

Query: 361 ADQAGVLADVTRILADSTISIDAMLQKEPAQGEQQTDIIMLTHQTQEKNIEAAIAKIEAL 420
           ADQAGVLADVTRILADSTISIDAMLQKEPA+GEQQTDIIMLTHQTQEKNIEAAIAKIEAL
Sbjct: 361 ADQAGVLADVTRILADSTISIDAMLQKEPAEGEQQTDIIMLTHQTQEKNIEAAIAKIEAL 420

Query: 421 STVVGQVTKIRLEEL 435
           +TV+G VTKIRLEEL
Sbjct: 421 TTVMGTVTKIRLEEL 435


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,273,323
Number of extensions: 53241
Number of successful extensions: 212
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 348
Effective length of database: 1,203,190
Effective search space: 418710120
Effective search space used: 418710120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)