BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1939.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferas...   597   e-172
gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferas...    85   9e-18

>gi|300311402|ref|YP_003775494.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  597 bits (1540), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 285/305 (93%), Positives = 293/305 (96%)

Query: 1   MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGVCREHGIPCITPT 60
           MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGVCREHGI CITP 
Sbjct: 1   MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGVCREHGIACITPA 60

Query: 61  DPKSQQLLAQVQAMQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWA 120
           DPKS QLLAQVQA QPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWA
Sbjct: 61  DPKSPQLLAQVQAAQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWA 120

Query: 121 VLRGETETGATLHEMTAKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWKVLPAM 180
           VL GETETGATLHEMT KPDAGAIVAQT+VPILPDDTAHEVFGKVVVAAE+TLW VLPAM
Sbjct: 121 VLHGETETGATLHEMTVKPDAGAIVAQTSVPILPDDTAHEVFGKVVVAAELTLWNVLPAM 180

Query: 181 LAGNTPKLPNDLTQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAFEEIAGDKI 240
           L+G TP +PNDL++GSY+ GRKPEDGRIDWRRTA EVHNLVRAVAPPYPGAFEEIA DKI
Sbjct: 181 LSGRTPSMPNDLSKGSYYGGRKPEDGRIDWRRTAREVHNLVRAVAPPYPGAFEEIADDKI 240

Query: 241 TVTRTRLVPPAAHPALQRAHGMQDKFFEGGKLYARCGDGNFLQILGIQINDQDASLNNYL 300
           TVTRTRLVPP+AHPALQRAHGMQDKFFEGGKLYARCGDGNFLQILGIQINDQDASLNNYL
Sbjct: 241 TVTRTRLVPPSAHPALQRAHGMQDKFFEGGKLYARCGDGNFLQILGIQINDQDASLNNYL 300

Query: 301 KYMAS 305
           KYMAS
Sbjct: 301 KYMAS 305


>gi|300313635|ref|YP_003777727.1| methionyl-tRNA formyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 84.7 bits (208), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 121/279 (43%), Gaps = 16/279 (5%)

Query: 15  CLKVLLARGVQVSLVVTHEDSATE---NIWFGSVAGVCREHGIPCITPTDPK-------- 63
            L+ L A G +++LV+T  D        +    V     +HG P   P   +        
Sbjct: 15  ALEALYAAGHEITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVAQPVSLRLDGKYPEV 74

Query: 64  SQQLLAQVQAMQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWAVLR 123
           +Q+  A +++   D +    Y  +LP  VL   + G  N+HGSLLP++RG  PI+ A+  
Sbjct: 75  AQEAHALLRSTPHDVMIVAAYGLILPRSVLDIPRYGCINIHGSLLPRWRGAAPIHRAIEA 134

Query: 124 GETETGATLHEMTAKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWKVLPAMLAG 183
           G+ ETG T+ +M    D G ++   ++PI  +DT   +  K+       + + +  +  G
Sbjct: 135 GDAETGITIMQMEEGLDTGPMMLIESLPISDEDTTGSLHDKLAALGAKMIVEAMEKLEQG 194

Query: 184 NTPKLPNDLTQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAFEEIAGDKITVT 243
             P  P      +Y +    E+  +D+ ++A ++   +RA   P+PGA        + + 
Sbjct: 195 TLPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFN-PFPGATGRFGDTVVKLW 253

Query: 244 RTRLVPPAAHPALQRAHGMQDKFFEGGKLYARCGDGNFL 282
           + R    A   A Q   G        G +   CG+G  L
Sbjct: 254 KAR----AVTVAQQGEPGQVLSADAQGGIVVACGEGALL 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,051,095
Number of extensions: 46384
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)