BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1935.p
         (567 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311398|ref|YP_003775490.1| phosphate starvation-inducible ...  1087   0.0  
gi|300310057|ref|YP_003774149.1| phosphate starvation-inducible ...   107   3e-24

>gi|300311398|ref|YP_003775490.1| phosphate starvation-inducible
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 566

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/567 (94%), Positives = 539/567 (95%), Gaps = 1/567 (0%)

Query: 1   MPLPKMPSKPASMLSPEDYPKADRNKPVKPNITLVETSAPVVAPQEVAVAVVDVSDTKVA 60
           MPLPKMPSKPASMLSPEDYPKADR+KPVKPNITLVET+        VA     V     A
Sbjct: 1   MPLPKMPSKPASMLSPEDYPKADRSKPVKPNITLVETTPAPAVASPVAAVAPAVEAKAAA 60

Query: 61  APRARITGKTAAVTEKPKTAPKSVETRSKSTTSRVADKLGKSKLFVLDTNVLMHDPTSLF 120
             RARITGKT  V EKPKTAPKS E R KS TSRVADKLGKSKLFVLDTNVLMHDPTSLF
Sbjct: 61  P-RARITGKTTTVAEKPKTAPKSAEIRPKSPTSRVADKLGKSKLFVLDTNVLMHDPTSLF 119

Query: 121 RFEEHDIYLPMVTLEELDNHKKGMSEVARNARQISRSLDALVSDIAEDAIDLGIPLSKLG 180
           RFEEHDIYLPMVTLEELDNHKKGMSEVARNARQISRSLDALVSD+AED+IDLGIPL+KLG
Sbjct: 120 RFEEHDIYLPMVTLEELDNHKKGMSEVARNARQISRSLDALVSDVAEDSIDLGIPLAKLG 179

Query: 181 NKDAKGRLYFQTKLQNAALPEGLPEGKADNQILGVVRALDQQYPERPVVLVSKDINMRLK 240
           NKDAKGRLYFQTKLQNAALPEGLPEGKADNQILGVVRALDQQYPERPVVLVSKDINMRLK
Sbjct: 180 NKDAKGRLYFQTKLQNAALPEGLPEGKADNQILGVVRALDQQYPERPVVLVSKDINMRLK 239

Query: 241 ARAIGLPAEDYFNDHVLEDTDLLYSGIQQLPDDFWTKHGKGMESWQESRHGSSYTYYRVT 300
           ARAIGLPAEDYFNDHVLEDTDLLYSGIQQLPDDFW KHGKGMESWQESRHGSSYTYYRVT
Sbjct: 240 ARAIGLPAEDYFNDHVLEDTDLLYSGIQQLPDDFWNKHGKGMESWQESRHGSSYTYYRVT 299

Query: 301 GPYVPSLLVNQFVFIEPKNGEPAFYGQVSQINGKTAVLQTLRDFGHAKNSVWGITARNRE 360
           GPYVPSLLVNQFVFIEPKNGEPAFYGQV+QINGKTAVLQTLRDFGHAKNSVWGITARNRE
Sbjct: 300 GPYVPSLLVNQFVFIEPKNGEPAFYGQVTQINGKTAVLQTLRDFGHAKNSVWGITARNRE 359

Query: 361 QNFALNLLMNPECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIVTRVTVPVGEDI 420
           QNFALNLLMNPECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIVTRVTVPVGEDI
Sbjct: 360 QNFALNLLMNPECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIVTRVTVPVGEDI 419

Query: 421 GFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSRIKIKSLNFMRGRT 480
           GFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSRIKIKSLNFMRGRT
Sbjct: 420 GFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSRIKIKSLNFMRGRT 479

Query: 481 FVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRF 540
           FVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRF
Sbjct: 480 FVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRF 539

Query: 541 KGWAHSGHVTLARGERSRLADHASDVL 567
           KGWAHSGHVTLARGERSRLADHASDVL
Sbjct: 540 KGWAHSGHVTLARGERSRLADHASDVL 566


>gi|300310057|ref|YP_003774149.1| phosphate starvation-inducible
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 373

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 94/176 (53%), Gaps = 13/176 (7%)

Query: 348 KNSVWGITARNREQNFALNLLMNPECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEI 407
           K     +  R   Q+  LN ++  E D    +G AGTGKT LA+A  +   LE      I
Sbjct: 132 KTRKHDLRGRTPHQSQYLNAIL--EHDITFGVGPAGTGKTYLAVACAV-DALERDAVQRI 188

Query: 408 IVTRVTVPVGEDIGFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSR 467
           ++TR  V  GE +GFLPG   +K+ P++    D L  L          G   TQ L   +
Sbjct: 189 VLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDL---------LGFDRTQKLFEKQ 239

Query: 468 -IKIKSLNFMRGRTFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQID 522
            I+I  L +MRGRT  + F+I+DEAQN TP+QMK  +TR G G+K V  G++ Q+D
Sbjct: 240 AIEIAPLAYMRGRTLNHAFIILDEAQNTTPEQMKMFLTRIGFGSKAVITGDVTQVD 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,672,095
Number of extensions: 69045
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 2
Length of query: 567
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,193,720
Effective search space: 569404440
Effective search space used: 569404440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)