BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1932.p
         (478 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311394|ref|YP_003775486.1| replicative DNA helicase [Herba...   973   0.0  

>gi|300311394|ref|YP_003775486.1| replicative DNA helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 478

 Score =  973 bits (2515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/478 (99%), Positives = 478/478 (100%)

Query: 1   MKESSRGNPEFFRGQKESSDPQIDALRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVSAD 60
           MKESSRGNPEFFRGQKESSDPQIDALRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVSA+
Sbjct: 1   MKESSRGNPEFFRGQKESSDPQIDALRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVSAE 60

Query: 61  DFYRYDHRIIFEHIVKLINSTKPADVITVYEAMSTSGKAEEVGGLVYLNALAQNTPSAAN 120
           DFYRYDHRIIFEHIVKLINSTKPADVITVYEAMSTSGKAEEVGGLVYLNALAQNTPSAAN
Sbjct: 61  DFYRYDHRIIFEHIVKLINSTKPADVITVYEAMSTSGKAEEVGGLVYLNALAQNTPSAAN 120

Query: 121 IRRYAEIVRDRGILRKLITVADEISGNAFNPQGKDVKSMLDEAESKIFAIAEEGSRGSQG 180
           IRRYAEIVRDRGILRKLITVADEISGNAFNPQGKDVKSMLDEAESKIFAIAEEGSRGSQG
Sbjct: 121 IRRYAEIVRDRGILRKLITVADEISGNAFNPQGKDVKSMLDEAESKIFAIAEEGSRGSQG 180

Query: 181 FMEIQPLLTQVVERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGK 240
           FMEIQPLLTQVVERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGK
Sbjct: 181 FMEIQPLLTQVVERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGK 240

Query: 241 TAFSINIGEHVAIESGLPVAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRL 300
           TAFSINIGEHVAIESGLPVAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRL
Sbjct: 241 TAFSINIGEHVAIESGLPVAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRL 300

Query: 301 THAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGSSSEN 360
           THAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGSSSEN
Sbjct: 301 THAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGSSSEN 360

Query: 361 RASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 420
           RASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL
Sbjct: 361 RASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 420

Query: 421 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDNYIGNLAQPYGGD 478
           FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDNYIGNLAQPYGGD
Sbjct: 421 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFLGMYTKYDNYIGNLAQPYGGD 478


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,497,914
Number of extensions: 64570
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,198,455
Effective search space: 466198995
Effective search space used: 466198995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)