BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1926.p (662 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 1146 0.0 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 265 9e-72 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 225 8e-60 gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 173 3e-44 gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [... 57 3e-09 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 542/661 (81%), Positives = 603/661 (91%), Gaps = 6/661 (0%) Query: 1 MSTRKSSKKHGKP-TPIPAPAAAKSNLQDLLDVRKCLDLLDNRKTDEAKALCTAVLARVP 59 MSTRK+S KHGKP TP P K LQDLLDVRK LDLLD+RKTDEAKALC AVL+R P Sbjct: 1 MSTRKNSNKHGKPATPPP-----KHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRNP 55 Query: 60 KLVFANHARGLIAMQEGKFAEAEQYLRLAIEADPNNAEYIGNLASSILSQDRIDEAIALY 119 LVFANHARGL+AM EGKFA+AE YLR AIEADP NAEY+ NLA ++LSQDRIDEAIALY Sbjct: 56 TLVFANHARGLVAMHEGKFADAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALY 115 Query: 120 EQAISIDKENRAARIGLANALHEKNDPDASIAYFEDAVKREPNAPGPLSHLGRALVEARR 179 E AI ID+++RA+RIGLANALHEKNDP+AS+AYFEDAVKREPNAPGPLSHLGRAL+E +R Sbjct: 116 EHAIRIDRDHRASRIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRALIECKR 175 Query: 180 FEEAVATILKSLELQINFAPSHTALGEAFHAMEMYKEAVESHKTAVLLDPQDTYAHNKIA 239 + EAVA ILKSLELQI+FAPSHTALGEAFHAMEMYKEA+ESHKTA+LLDPQDTYAHNKIA Sbjct: 176 YNEAVAVILKSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIA 235 Query: 240 DSYLKLNKIEQAHEHMLRVIEIAPKDPNSYVKLGSSYFSTGDRFDDAMRMFNKALELDPK 299 DSYLKLN+I++AHEH+LRVIEIAPKDPN+YVKLGSSYFST DRFDDAMRMFNKALE+D K Sbjct: 236 DSYLKLNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSK 295 Query: 300 YALTYNNIGAIQHDHGDTDDAIANFRKALELRPNYPTAKHNLALSLLLQGQFKEGWEYHE 359 +ALTYNNIGAIQHDHGD +DAI NFRKALELRPNYPTA+HN+ALSLLLQG KEGWE HE Sbjct: 296 HALTYNNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHE 355 Query: 360 MRLVTKERAHVYRLIHKLFDIIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRLVIEQ 419 RLVT+ER+HVYRLIHKLFD+IPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVR+V++Q Sbjct: 356 SRLVTRERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQ 415 Query: 420 GARVAVHVKNPLYRLFQSFTPEVTLVRESDPLPPCDCAYVLMSLPHAMRTHTIDDIPRYP 479 GARVA+HVKNPLYRLFQS++PEVTLVRESDPLPPCDCAYVLMSLP+AM T T+DDIP P Sbjct: 416 GARVALHVKNPLYRLFQSYSPEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPSVP 475 Query: 480 KGYLAADPILASTWREKISRLTKSSEHLRVGVVWGGNPEHGNDRHRSIPLDKFKQLFDLP 539 GYL+ADPIL S+W EKI +L++S E LRVGVVWGGNPEHGNDRHRSI +DKF LF LP Sbjct: 476 GGYLSADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNPEHGNDRHRSIAMDKFATLFQLP 535 Query: 540 KVEFYSLQKGKPLEDLKALPPGLPVFNLGDECEDFADTAAAISNLDLVISVDTSVVHLAG 599 +EFYSLQKGKPL+ KALPPGLP+FNLGD+C+DFADTAAAI+NLDLV+SVDTSVVHLAG Sbjct: 536 NIEFYSLQKGKPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAG 595 Query: 600 AMSHPTWVLLPHIPDWRWLTEREDSPWYPSMHLFRQPALNDWNSVLKTVGEKLIVLQQKK 659 A+ HPTWVLLPH+PDWRWL +REDSPWYP M LFRQPAL+DW SVL VG++L+ LQQKK Sbjct: 596 ALGHPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQELVALQQKK 655 Query: 660 A 660 A Sbjct: 656 A 656 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 265 bits (677), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 201/639 (31%), Positives = 309/639 (48%), Gaps = 61/639 (9%) Query: 23 KSNLQDLLDVRKCLDLLDNRKTDEAKALCTAVLARVPKLVFANHARGLIAMQEGKFAEAE 82 ++N +L ++K L L + A+ L VL ++P+ AN+ G++ + + + AE Sbjct: 4 QANANQIL-LQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAE 62 Query: 83 QYLRLAIEADPNNAEYIGNLASSILSQDRIDEAIALYEQAISIDKENRAARIGLANALHE 142 L AIE +P++ + + A ++ R DEA+A Y+ ++++ + Sbjct: 63 AQLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNAD-------------- 108 Query: 143 KNDPDASIAYFEDAVKREPNAPGPLSHLGRALVEARRFEEAVATILKSLELQINFAPSHT 202 + E + R G AL R EA+A + ++ L + A + Sbjct: 109 ---------FVEALLAR-----------GAALRRLGRNREALADLERATALAPDNADAWF 148 Query: 203 ALGEAFHAMEMYKEAVESHKTAVLLDPQDTYAHNKIADSYLKLNKIEQAHEHMLRVIEIA 262 G H Y +A ES++ AV L P A + ++ N+++QA R +E+ Sbjct: 149 QRGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQ 208 Query: 263 PKDPNSYVKLGSSYFSTGDRFDDAMRMFNKALELDPKYALTYNNIGAIQHDHGDTDDAIA 322 P + G F R +A++ +++AL LD + + N G+ ++A Sbjct: 209 PDFFEAISNRGYVLFKM-QRPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRFEEASE 267 Query: 323 NFRKALELRPNYPTAKHNLALSLLLQGQFKEGWEYHEMRLVTKERAHVYRLIHKLFDIIP 382 ++R+A L+P+ +A N AL L QG F GW+ E R T++ R + P Sbjct: 268 SYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQMRGQQRQFMQ-----P 322 Query: 383 KWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRLVIEQGARVAVHVKNPLYRLFQSFTPEV 442 W G+ L GK ILL EQGFGD++QF+RY L+ +GARV + V+ L R P V Sbjct: 323 LWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPALTRQLAGL-PGV 381 Query: 443 TLVRESDPL--PPCDCAYVLMSLPHAMRTHTIDDIPRYPKGYLAADPILASTWREKISRL 500 T V +D PP D LMSLP A +T + DIPR P YL + + W +++ R Sbjct: 382 TQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAP--YLLPEASSWAAWHQRLPR- 438 Query: 501 TKSSEHLRVGVVWGGNPEHGN------DRHRSIPLDKFKQLFDLPK----VEFYSLQKGK 550 + LRVG+VW G+ + D RS+P L +L + +EFYSLQ G+ Sbjct: 439 ---NRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELAREHAALEFYSLQVGQ 495 Query: 551 -PLEDLKALPPGLPVFNLGDECEDFADTAAAISNLDLVISVDTSVVHLAGAMSHPTWVLL 609 + L A P V + E DFA+T A ++NLDL+I+VDTSV HLAGA+ P W+L Sbjct: 496 DAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGALGRPVWLLN 555 Query: 610 PHIPDWRWLTEREDSPWYPSMHLFRQPALNDWNSVLKTV 648 H WRW EREDSPWY M +F Q W+ V+ V Sbjct: 556 RHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARV 594 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 225 bits (574), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 189/586 (32%), Positives = 285/586 (48%), Gaps = 49/586 (8%) Query: 78 FAEAEQYLRLAIEADPNNAEYIGNLASSILSQDRIDEAIALYEQAISIDKENRAARIGLA 137 +AEA+ L ++A P + + + L S +Q R EA ++QA+ + Sbjct: 19 YAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRL------------ 66 Query: 138 NALHEKNDPDASIAYFEDAVKREPNAPGPLSHLGRALVEARRFEEAVATILKSLELQINF 197 L ++ ++ Y LGRA E RFE+A + +E Sbjct: 67 --LPPDSEEALALRY----------------RLGRAFYEEGRFEDAFLLYRELIESGWQL 108 Query: 198 APSHTALGEAFHAMEMYK----EAVESHKTAVLLDPQDTYAHNKIADSYLKLNKIEQAHE 253 A A M +A+ + A+ DP ++ A + + + + A + Sbjct: 109 PELFVAAAAALQGMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQ 168 Query: 254 HMLRVIEIAPKDPNSYVKLGSSYFSTGDRFDDAMRMFNKALELDPKYALTYNNIGAIQHD 313 + + + + + ++ G + G +F++A+R +++AL L P+ + + G Sbjct: 169 CIHQALRLDDQRAQYWLAAGLVEHAQG-QFEEALRYYDQALILAPELVDAHVSRGTTLAR 227 Query: 314 HGDTDDAIANFRKALELRPNYPTAKHNLALSLLLQGQFKEGWEYHEMRLVTKERAHVYRL 373 ++AI ++R+AL + A NLALSLL+ G+ ++ W +E R + A YR Sbjct: 228 LRQHEEAIDSYRRALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRS-ADPYR- 285 Query: 374 IHKLFDIIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRLVIEQGARVAVHVKNPLYR 433 IP W+G SSLAGK ILL EQG GD+IQF RYV L+++ GA+V + V L Sbjct: 286 ----HATIPAWNGGSSLAGKRILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLA 341 Query: 434 LFQSF---TPEVTLVRESDPLPPCDCAYVLMSLPHAMRTHTIDDIPRYPKGYLAADPILA 490 L S TP +TLV +PLP D LMSLP T DDIP YL ADP Sbjct: 342 LMHSLAVPTP-LTLVAMGEPLPEVDFQLPLMSLPLVCNTRA-DDIPAAVP-YLCADPARR 398 Query: 491 STWREKISRLT-KSSEHLRVGVVWGGNPEHGNDRHRSIPLDKFKQL-FDLPKVEFYSLQK 548 W E+++ L +S +R+G+V GN + ND RSI L +F L P+++F+ +Q Sbjct: 399 ILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQP 458 Query: 549 GKPLEDLKALPPGLPVFNLGDECEDFADTAAAISNLDLVISVDTSVVHLAGAMSHPTWVL 608 D + +G DFADTAA ++ +DLVISVDT+ HLAGAM+ P W+ Sbjct: 459 DLRQADRQWCEQQPGWHWVGAAINDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIA 518 Query: 609 LPHIPDWRWLTEREDSPWYPSMHLFRQPALNDWNSVLKTVGEKLIV 654 LP+ PDWRWL DSPWYP+ LFRQ W+ V+ T+ L V Sbjct: 519 LPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDVILTLRAALAV 564 Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 18/251 (7%) Query: 32 VRKCLDLLDNRKTDEAKALCTAVLARVPKLVFANHARGLIAMQEGKFAEA----EQYLRL 87 ++ L D EA+AL A+L P+ A H G +A +G+FAEA +Q LRL Sbjct: 7 LKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAWQQALRL 66 Query: 88 AIEADPNNAEYIG---NLASSILSQDRIDEAIALYEQAISIDKENRAARIGLANALH--- 141 P++ E + L + + R ++A LY + I + + A AL Sbjct: 67 ---LPPDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQGMS 123 Query: 142 --EKNDPDASIAYFEDAVKREPNAPGPLSHLGRALVE-ARRFEEAVATILKSLELQINFA 198 KNDP A +A E+A++R+P H AL E AR+++ A I ++L L A Sbjct: 124 PSGKNDPQA-LALLEEALQRDPGQ-ADTWHRKAALHERARQWDAARQCIHQALRLDDQRA 181 Query: 199 PSHTALGEAFHAMEMYKEAVESHKTAVLLDPQDTYAHNKIADSYLKLNKIEQAHEHMLRV 258 A G HA ++EA+ + A++L P+ AH + +L + E+A + R Sbjct: 182 QYWLAAGLVEHAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRA 241 Query: 259 IEIAPKDPNSY 269 + I KD +++ Sbjct: 242 LRIDDKDADAH 252 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 178/387 (45%), Gaps = 23/387 (5%) Query: 281 DRFDDAMRMFNKALELDPKYALTYNNIGAIQHDHGDTDDAIANFRKALELRPNYPTAKHN 340 +R ++A+ + A + D AL N+ I G + A A F +AL P++P A+ Sbjct: 157 NRHEEALECYPPAADEDQARALHAFNMADILRRMGRIEQAQAAFEQALRWHPDFPEAEVG 216 Query: 341 LALSLLLQGQFKEGWEYHEMRLVTKERAHVYRLIHKLFDIIPKWDGKSSLAGKYILLMHE 400 A LL Q + EGW HE R E A + P+W + GK +LL E Sbjct: 217 RAHMLLSQQHYAEGWRAHEARFGIAELAR-----RGIDSPRPRWRAGEPVRGKRVLLWAE 271 Query: 401 QGFGDSIQFLRYVRLVIEQGARVAVHVKNPLYRLFQSFTPEVTLVRESDPLPPCDCAYVL 460 QG GD++QF RY+ LV +Q A V++ L + P+V + P D L Sbjct: 272 QGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLAPCLPQVRCMANPGEAPDHD----L 327 Query: 461 MSLPHAMRTHTIDDIPRY--PKGYLAADPILASTWREKISRLTKS-SEHLRVGVVWGGNP 517 + ++ PR P YLAA P W+ +S L + R+G+ W G Sbjct: 328 HASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAYLSALWPAMPRRPRLGIAWAGRQ 387 Query: 518 EHGNDRHRSIPLDKFKQLFDLPKVEFYSLQKGKPLEDLKA---LPPGLPVFNLGDECEDF 574 R IPLD L+ LP +F SLQ P D A L L L D+ Sbjct: 388 YATVHHSRDIPLDALAPLWTLP-ADFVSLQVEVPAGDQAAHATLAQRLHTPTL----VDW 442 Query: 575 ADTAAAISNLDLVISVDTSVVHLAGAMSHPTWVLLPHIPDWRWLTEREDSPWYPSMHLFR 634 ADTAA + LDLVISVDT+VVHLAGA+ P + L + +WRW + +PWYPS+ L R Sbjct: 443 ADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEWRWGVKGSQTPWYPSLQLLR 502 Query: 635 QPALNDWNSVLKTVGEKLIVLQQKKAQ 661 Q W V V E L V Q+ Q Sbjct: 503 QRERGQWGPV---VEEMLAVCTQRLLQ 526 >gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 600 Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 141/319 (44%), Gaps = 40/319 (12%) Query: 46 EAKALCTAVLARVP--KLVFANHARGLIAMQEGKFAEAEQYLRLAIE--ADPNNAEYIGN 101 EA L T L + P + V +AR L+ ++ K A Q+ L E DP +G Sbjct: 255 EATKLVTEFLRKYPDAREVRVAYARTLVEQKDYKDART-QFEALLKEDGEDPTTLFALGV 313 Query: 102 LASSILSQDRIDEA---IALYEQAISI----DKENRAARIGLANALHEKNDPDASIAYFE 154 L++ D++ +A + Y Q +S D++ A + L+ E+ D D ++ Y + Sbjct: 314 LSAQT---DQLKDAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERRDIDGALRYLD 370 Query: 155 DAVKREPNAPGPLS-HLGRALVEARRFEEAVATILKSLEL----------QINFAPSHTA 203 + EP G ++ + RA + AR+ + + K+LE Q+ + +A Sbjct: 371 ---RGEPGTEGYVNIQVRRAQLLARKSD--IEGARKALEAAQSESTNDGEQLQLLQAESA 425 Query: 204 LGEAFHAMEMYKEAVESHKTAVLLDPQDT---YAHNKIADSYLKLNKIEQAHEHMLRVIE 260 L +EA + K + P +T Y + + D KL K ++ + RVI+ Sbjct: 426 L---LRDANRNQEAADVIKAGLERFPNNTDLLYDYAMVLD---KLGKYDEMEASLRRVIK 479 Query: 261 IAPKDPNSYVKLGSSYFSTGDRFDDAMRMFNKALELDPKYALTYNNIGAIQHDHGDTDDA 320 +AP + ++Y LG S R +A+ + KA E+ P+ A +++G + G D+A Sbjct: 480 LAPGNQHAYNALGYSLADRNVRLPEALELIRKAAEMAPEDAFIADSLGWVLFRMGRLDEA 539 Query: 321 IANFRKALELRPNYPTAKH 339 R+A LRP+ H Sbjct: 540 ETQMRRAYGLRPDAEIGVH 558 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,008,696 Number of extensions: 84184 Number of successful extensions: 324 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 10 Length of query: 662 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 571 Effective length of database: 1,188,985 Effective search space: 678910435 Effective search space used: 678910435 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)