BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1923.p (689 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 pro... 1162 0.0 gi|300310454|ref|YP_003774546.1| flagellar hook-associated prote... 917 0.0 gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herb... 718 0.0 >gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 1162 bits (3007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/689 (86%), Positives = 649/689 (94%) Query: 1 MATSTGTISTSAGPLDVSTLVSQLISAESQTQLTPLTTQASSYNTLISAYGSLKSTLSTY 60 MATSTGTISTSAGPLDV+TLVSQLISAESQ+QLTPLTTQASSYNTLISAYGSLKS +STY Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QSAIAGMTAATFSSQKSSVSNAGTGSNLTTDPFTADVNADDSTKILAQKIQSAGISSGTT 120 QSAI MT+A+FS+QKSSVSNAGTGSNLTTDPF+AD+N DDSTKILAQKIQSAGISSGTT Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 Query: 121 YKSGDSIAIKVGTNSPTFITLQADATLAGVRDAINAAKTGVTASITTDGNGDHLVLESNT 180 + +GDSIAIK+GTNSP F+TLQA++TLAGVRDAINA KTG TASI TDG GDHLVLESNT Sbjct: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 Query: 181 GGTANTIKVTANNSLSGFFYDPSSSTSSTMTQIQAPRDATKAASGTYAVAVSQLAQTEKL 240 GGTANTIKVTANNSLSGFFYDPSSST STMTQ QAPRDATKAASG YAVAVSQLAQ EKL Sbjct: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 Query: 241 SSASIAPGSTFDNGILAIKTGTGSTVMIQPATDSLAGVRDAINAASAGVNATIVSDGTND 300 SSASIAPGSTFDNG+LAIKTG+GST +I+P T++LAGVRDAIN++ AGVNATIVSDGTND Sbjct: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 Query: 301 HLVITAQNSGAANTIKITGTGNFSVFSSDPSGAITSQNVSTNQTYSSGTLNLKVGDTSVA 360 HLV+TA+NSG+ NTIKITGT NF+VF+SDPSG +TS NV++ QTYS+G L LKVGD+S Sbjct: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 Query: 361 INPSANSGGNIDLKQVMSAINNANAGVSASISNDGSNDHLVLTPTGSSATAAVTLTGTGD 420 I P AN GNIDL QV AINNANAGV+ASI+NDGSNDHLVLTPTGSSATAAV+LTGT D Sbjct: 361 IAPVANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTSD 420 Query: 421 YAGLTMSGMGQLLKAQDAKLSIDGVSVTSPSNKVQNAISGVTLNLAKVTTSADNFTLNIS 480 YAGL+MSGMGQLLKAQDAKLSIDGV+VTSP+NKV+N ISGVTLNL+KVTTSADNFTLNIS Sbjct: 421 YAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNIS 480 Query: 481 NDTSGITTAANSFVSAYNTLAKAIAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLRN 540 NDTSGITTAANSFV+AYNTLAKA+AGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLRN Sbjct: 481 NDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLRN 540 Query: 541 TLFATVDGGNGISSLADIGIAFQKDGTLALDATKLSTATTNNFAGISNLFTGTDPDPTNT 600 TLF+TVDGGNGI++L+DIGI+FQKDGTLALD+TKLSTA TNNFAGI+NLF GTDPDPTNT Sbjct: 541 TLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGTDPDPTNT 600 Query: 601 TSSKNGIVTRLQTLMTNILSDSGIIATKTNGLQASLKINQDRQTAVQTRLSNLKDNYTNQ 660 TSSKNGIVT+LQTLMT++LSD+GIIATKT+GLQASLKINQDRQTAVQ+RLSNLKD YTNQ Sbjct: 601 TSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTNQ 660 Query: 661 FNQLNTTLASMQSTQSYLTQQLAGLAKSS 689 FNQLN TL+SMQSTQSYLTQQLA LAKSS Sbjct: 661 FNQLNLTLSSMQSTQSYLTQQLANLAKSS 689 >gi|300310454|ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/690 (69%), Positives = 579/690 (83%), Gaps = 15/690 (2%) Query: 1 MATSTGTISTSAGPLDVSTLVSQLISAESQTQLTPLTTQASSYNTLISAYGSLKSTLSTY 60 MATSTGTISTSAGPLDV+TLV+QLIS ES+++LTPL + SS+NTLISAYGSLK+ ++Y Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 61 QSAIAGMTAATFSSQKSSVSNAGTGSNLTTDPFTADVNADDSTKILAQKIQSAGISSGTT 120 QSA+ +TAA+FS+QK+++SNAGTG+NLTTDPFTAD N D+STK+LAQK+QSAG ++G T Sbjct: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 Query: 121 YKSGDSIAIKVGTNSPTFITLQADATLAGVRDAINAAKTGVTASITTDGNGDHLVLESNT 180 + +GDS+AIKVGTN PTFITLQA+ATLAGVRDAINAAK GVTASITTDG+GDHLVLESNT Sbjct: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 Query: 181 GGTANTIKVTANNSLSGFFYDPSSSTSSTMTQIQAPRDATKAASGTYAVAVSQLAQTEKL 240 GGTANTIK+TANNSLS YDPSS+ SST+TQIQAPRDA+KAA+G Y +AV+QLAQ K+ Sbjct: 181 GGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 Query: 241 SSASIAPGSTFDNGILAIKTGTGSTVMIQPATDSLAGVRDAINAASAGVNATIVSDGTND 300 SSA IAPGSTFDNG+LAIKTG GST +IQP T+SLAGVRDAINA+ AGVNA+IV+DGTND Sbjct: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 Query: 301 HLVITAQNSGAANTIKITGTGNFSVFSSDPSGAITSQNVSTNQTYSSGTLNLKVGDTSVA 360 HLV+TA+++G+ANT+++TGTGNF+ F+ DPSG IT+ V+TNQTYSSG+L L+VG S Sbjct: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 Query: 361 INPSANSG-GNIDLKQVMSAINNANAGVSASISNDGSNDHLVLTPTGSSATAAVTLTGTG 419 INP+ G G I L VM AIN+AN GV+ASI+NDGS DHLVLTP+G T AV LTG G Sbjct: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPSG---TDAVKLTGAG 417 Query: 420 DYAGLTMSGMGQLLKAQDAKLSIDGVSVTSPSNKVQNAISGVTLNLAKVTTSADNFTLNI 479 DY+ L S MGQL KAQDAKL++DGV+VTS SNKV N ISGVTLNL+KVTTSADNF+L+I Sbjct: 418 DYSDLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSADNFSLSI 477 Query: 480 SNDTSGITTAANSFVSAYNTLAKAIAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLR 539 +NDTSG++TAAN+FV+AYNTLAKA+A +T QTPSTT GQA+T +PLASESSV +M Q+R Sbjct: 478 NNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVR 537 Query: 540 NTLFATVDGGNGISSLADIGIAFQKDGTLALDATKLSTATTNNFAGISNLFTGTDPDPTN 599 NT+ + G NG ++L+ IGI+FQKDGTLALDATKL+ A +F GI+ LF Sbjct: 538 NTMLGAL-GDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLF--------- 587 Query: 600 TTSSKNGIVTRLQTLMTNILSDSGIIATKTNGLQASLKINQDRQTAVQTRLSNLKDNYTN 659 TS+ NG+V +LQ LM IL +SG++A+KT GLQ SLKI D+QTA RL +LKD YTN Sbjct: 588 -TSATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTN 646 Query: 660 QFNQLNTTLASMQSTQSYLTQQLAGLAKSS 689 QFN+LN TLA+MQS QSYLTQQLA L+KSS Sbjct: 647 QFNRLNVTLATMQSRQSYLTQQLAKLSKSS 676 >gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/694 (55%), Positives = 508/694 (73%), Gaps = 22/694 (3%) Query: 1 MATSTGTISTSAGPLDVSTLVSQLISAESQTQLTPLTTQASSYNTLISAYGSLKSTLSTY 60 MATSTG+ISTSAGPLDV+ LV+QL+S ES+++LTPL ++A S+N LISAYG L + L+TY Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 61 QSAIAGMTAATFSSQKSSVSNAGTGSNLTT--DPFTADVNADDSTKILAQKIQSAGISSG 118 Q+A+A +TAA FS+QK++VSN G S+ + D +AD+N+D STK AQ I+SAG +SG Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINSDASTKAQAQIIKSAGFASG 120 Query: 119 TTYKSGDSIAIKVGTNSPTFITLQADATLAGVRDAINAAKTGVTASITTDGNGDHLVLES 178 +K+GDS+AIKVG SP FITL+ADAT+ G+RD INAA+ GVTAS+ D GDHLVLES Sbjct: 121 HLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 Query: 179 NTGGTANTIKVTANNSLSGFFYDPSSSTSSTMTQIQAPRDATKAASGTYAVAVSQLAQTE 238 NT GTAN +KV ANNSLS +D S MTQ QA RDAT AA G+YA++V QLAQ+ Sbjct: 181 NTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 Query: 239 KLSSASIAPGSTFDNGILAIKTGTGSTVMIQPATDSLAGVRDAINAASAGVNATIVSDGT 298 KLSSA IAPGSTFD G+LAIK G+GST +I+PA+++LAGVRDAINAA+AGVNA+IVSDG Sbjct: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 Query: 299 NDHLVITAQNSGAANTIKITGTGNFSVFSSDPSGAITSQNVSTNQTYSSGTLNLKVGDTS 358 +HLV+TA+ SGA N ++I+GTG+F+VFSSDPSG ++ +V+ + +S G +NL VG + Sbjct: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 Query: 359 VAINP-SANSGGNIDLKQVMSAINNANAGVSASISNDGSND----HLVLTPTGSSATAAV 413 +++ P SA +G L V AIN A AGVSA++ +G D LVL+ +GS V Sbjct: 361 ISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSD---PV 417 Query: 414 TLTGTGDYAGLTMSGMGQLLKAQDAKLSIDGVSVTSPSNKVQNAISGVTLNLAKVTTSAD 473 +L G+GDYA L S MGQL K QDA+LSIDGV++T+ SN +++AISGVTLNL K T++ D Sbjct: 418 SLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATD 477 Query: 474 NFTLNISNDTSGITTAANSFVSAYNTLAKAIAGMTAQTPSTTLGQANTSAPLASESSVQT 533 TL ISND+SG+ A NSFV+A+NTLAKA+A MT Q P+ GQA LA ES V+ Sbjct: 478 KLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMVRA 537 Query: 534 IMSQLRNTLFATVDGGNGISSLADIGIAFQKDGTLALDATKLSTATTNNFAGISNLFTGT 593 + +LRN + A++ GN + SL IG+ F+KDGTL LD+ +L+ A NF ++ LF G Sbjct: 538 LTGELRNAVLASMP-GNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAG- 595 Query: 594 DPDPTNTTSSKNGIVTRLQTLMTNILSDSGIIATKTNGLQASLKINQDRQTAVQTRLSNL 653 K G+V R ++L+ +L + G++A KT GLQ SLKI D+Q A + RL+NL Sbjct: 596 ----------KEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANL 645 Query: 654 KDNYTNQFNQLNTTLASMQSTQSYLTQQLAGLAK 687 +D+YTNQFN+LN TL+ MQ++Q+YLTQQLA L + Sbjct: 646 RDSYTNQFNRLNVTLSKMQASQNYLTQQLARLRR 679 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.305 0.119 0.307 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,769,795 Number of extensions: 69695 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 3 Length of query: 689 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 597 Effective length of database: 1,184,250 Effective search space: 706997250 Effective search space used: 706997250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits) S2: 134 (56.2 bits)