BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1920.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311380|ref|YP_003775472.1| hypothetical protein Hsero_2064...   587   e-169

>gi|300311380|ref|YP_003775472.1| hypothetical protein Hsero_2064
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  587 bits (1512), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 289/351 (82%), Positives = 323/351 (92%), Gaps = 2/351 (0%)

Query: 46  MSGRILSNFNDGTFLVRIANTAARMVLPNSAKVGDTLTLTLVSKDPRPTFSVNEGSIRSD 105
           MSGRILSNF+DGTFLVRIANTAARMVLPN+AKVGD L LTLVSKDPRPTFSVNEGSIR D
Sbjct: 1   MSGRILSNFSDGTFLVRIANTAARMVLPNNAKVGDALVLTLVSKDPRPTFSVNEGSIRPD 60

Query: 106 EESASVALSSAGRAMQKDLKSLQFVTRDESGADQIAQNEDVAADAQAKGARQGQAGGPAS 165
           EESASVALS+AGRAMQKDLKSLQFVTRD++GA QIAQNED+AADAQAKGAR GQ G PAS
Sbjct: 61  EESASVALSNAGRAMQKDLKSLQFVTRDDAGAGQIAQNEDIAADAQAKGARPGQTGAPAS 120

Query: 166 TTTTLSNAGRLIDTLLQASQHGDVSDHVNATAPLLPKANLPPEQVASALKDAIAYSGVFY 225
           TTTTLSNA RLID+LL ASQ GD++DHV+A APLLP+A LPPEQ+A ALKDAIAYSGVFY
Sbjct: 121 TTTTLSNAARLIDSLLHASQQGDMADHVSAPAPLLPRAGLPPEQMAGALKDAIAYSGVFY 180

Query: 226 ESHVSAWAAGQRSAEDLMKEPQAQVASRNGGDINLLNDNNPAQNQLGQLINLQLNALEQQ 285
           ESHVSAWAAGQR AE+L++EPQAQVA+++GG+INLL+ N+PAQNQLGQ+INLQLNALEQQ
Sbjct: 181 ESHVSAWAAGQRPAEELLREPQAQVAAKHGGEINLLSQNDPAQNQLGQIINLQLNALEQQ 240

Query: 286 RVVWHGEVWPDQKMEWEINQEHDQDPSQNSQHNGEESAPTWHSVVRFNFAHLGSVSASIR 345
           RV+WHGEVWP QKM+WEI+QEH Q  S N+Q + +E+ P+WHSVVRF+FAHLG VSASIR
Sbjct: 241 RVLWHGEVWPGQKMDWEISQEHGQQES-NAQAD-DEAPPSWHSVVRFDFAHLGGVSASIR 298

Query: 346 LIGQQIHVQVKADNEAATAALRGNSGLFANAMAAAGTSLDSLIVKQADGET 396
           LIGQQIHVQVKADNE+  AALRGNS LFA+AMAAAGTSLDSLIVKQ+ GET
Sbjct: 299 LIGQQIHVQVKADNESTAAALRGNSSLFADAMAAAGTSLDSLIVKQSHGET 349


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,010,365
Number of extensions: 34925
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)