BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1916.p
         (569 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059...  1042   0.0  

>gi|300311375|ref|YP_003775467.1| hypothetical protein Hsero_2059
           [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score = 1042 bits (2695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/569 (95%), Positives = 556/569 (97%)

Query: 1   MPQAQPAQGGVLGYARSPQGKRILLIIAAAATLALMAGIWLWSQKVEYRVLFSNFNDRDG 60
           MP +QPAQ G++GYARSPQGKRILLIIAAAATLA+MAGIWLWSQKVEYRVLFSNFNDRDG
Sbjct: 1   MPGSQPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDG 60

Query: 61  GAIVAALQQMNVPYKYSESGMAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGI 120
           GAIVA+LQQMNVPYKYS+ G AILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGI
Sbjct: 61  GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGI 120

Query: 121 SQFLEQVNFQRALEGELARSVQSLSSVQTARVHLALPKASVFVRDQQKPTASVILSLYPG 180
           SQFLEQVNFQRALEGELARSV SL+SVQTARVHLALPKASVFVRDQQKPTASV+LSLYPG
Sbjct: 121 SQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPG 180

Query: 181 RYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQGQPNTLDPTQLKYVQDM 240
           RYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQ QPNTLDPTQLKYVQDM
Sbjct: 181 RYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDM 240

Query: 241 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEA 300
           QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEA
Sbjct: 241 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEA 300

Query: 301 NSATSGTSGVPGALTNQPPAPATAQIVNPAAANGAANQNGAATPNGAAPTPAASGNSRKD 360
           NSA++GTSGVPGAL+NQPPAPATA IVNPA ANGAANQ GAATPNGA PTP A+GNSRKD
Sbjct: 301 NSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTGAATPNGALPTPTATGNSRKD 360

Query: 361 ETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTLDNTGKIVMRPLTEAERNQITDLVK 420
           ETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRT+DNTGKIVMRPLTEAERNQITDLVK
Sbjct: 361 ETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLVK 420

Query: 421 EAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYILVAAVLLFLYFRV 480
           EAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKY+LVAAVLLFLYFRV
Sbjct: 421 EAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFRV 480

Query: 481 LRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGEPAVDERAQY 540
           LRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGE  VDERAQY
Sbjct: 481 LRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGESEVDERAQY 540

Query: 541 KANLETAKQWAKNDPKLVASIIKSWVNNE 569
           KANLETAKQWAKNDPKLVASIIKSWVNNE
Sbjct: 541 KANLETAKQWAKNDPKLVASIIKSWVNNE 569


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,496,986
Number of extensions: 52831
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 479
Effective length of database: 1,193,720
Effective search space: 571791880
Effective search space used: 571791880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 133 (55.8 bits)