BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1911.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311370|ref|YP_003775462.1| flagellar hook-length control p...   498   e-142

>gi|300311370|ref|YP_003775462.1| flagellar hook-length control
           protein [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  498 bits (1282), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 304/439 (69%), Positives = 344/439 (78%), Gaps = 19/439 (4%)

Query: 1   MNTSLPLLNVITGSQAANGARSGNPADSFTADVPFNQVLNSQVSTRLQDNQAQSRQAEQA 60
           MNTSLPLLNVITGSQAA GARS NPADSF+ADVPFNQVLNSQVSTR Q N +Q +     
Sbjct: 1   MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQDKPQAAQ 60

Query: 61  AANQAAANQAAANQQAQANASASKSNKTEGSEQKDQVSDKDKDSDDDASTQASAELLALV 120
               AA +Q       Q+ +SA  S      +++D   D+DKDSDD A TQASAELLALV
Sbjct: 61  EQQPAAPSQPT-----QSASSAKASAANGSEQKQDSAKDEDKDSDDTA-TQASAELLALV 114

Query: 121 ANIAQNAVKPVTEGKSQNTDADLLAQAKRGGAKLSLADEHQAML-DKKDGKVDLAALQNA 179
           ANIAQNAVKPVT+GKS++TDADLLAQAKRGGA LSLADE QA+  D KDGK+DLA LQ++
Sbjct: 115 ANIAQNAVKPVTDGKSEHTDADLLAQAKRGGASLSLADEQQALAGDGKDGKIDLAGLQSS 174

Query: 180 MNAAKGKQD---AELAGKGNVAEAN-APVHAGKD---AIDLGA--AKATPKDDATTLAAR 230
           + A KGKQD   A+LA K N AEAN    HA K    A+DLG+  A+A  K+DA+TLA R
Sbjct: 175 LAANKGKQDGAAADLARKANAAEANPTDAHAAKGEKPAVDLGSEKAQALSKEDASTLANR 234

Query: 231 AQLHKTTPELAVNPAKQELPQAAPTPVVLPAMQQTLAANQPQAVFAPAYSDKIQANVGSA 290
           AQ  K T E  V  AKQELPQA PTPVV+PAMQQ LAANQ QAVF   Y+DKIQ NVGSA
Sbjct: 235 AQYGKATTE-TVATAKQELPQATPTPVVMPAMQQALAANQTQAVFGTTYTDKIQPNVGSA 293

Query: 291 GWNQALGSKITWMASAGMQSASLSLNPPDLGPMQVVLNVHNQQADATFITAQPEVKQALE 350
           GW+QA+G+KITWMA+ G+QSASL+LNPPDLGPMQVVLNVHNQQADATFITAQPEVKQALE
Sbjct: 294 GWDQAVGNKITWMATGGIQSASLTLNPPDLGPMQVVLNVHNQQADATFITAQPEVKQALE 353

Query: 351 AAMPKLREMMDQAGIQLGQANVQTGMPNQQQGAGNGQPQARNSS-SGNFGKDQDGDAAIT 409
           AAMPKLREMMDQAGIQLGQA V TGMPNQQQGA  GQ QAR+SS +G  G++QDG+ AIT
Sbjct: 354 AAMPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSSSGAGGAGQEQDGEIAIT 413

Query: 410 GTTSASASTSGLGLVDTFA 428
              + + +TSGLGLVDTFA
Sbjct: 414 -GAATATTTSGLGLVDTFA 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.118    0.316 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 959,130
Number of extensions: 34866
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 132 (55.5 bits)