BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1907.p
         (178 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311366|ref|YP_003775458.1| flagellar biogenesis protein Fl...   186   8e-49

>gi|300311366|ref|YP_003775458.1| flagellar biogenesis protein FliO
           [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  186 bits (472), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 107/130 (82%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 50  LPSSSGSVFTMLFGLVVVLAVMAGVAWLFKRFGLTQNFNGNAAAKVVGGVSVGTRERVMV 109
           LPSS GSVFTML GL VVLAV+A VAWLFKRFGL Q   GNAAAKVVGGVSVGTRERVMV
Sbjct: 77  LPSSGGSVFTMLLGLTVVLAVLAAVAWLFKRFGLNQGLAGNAAAKVVGGVSVGTRERVMV 136

Query: 110 IEVGEQWIVVGVAPGRVNALATLPRQELAAGQSG-QGSGPSFANWLKHTMDKRNGGAGNG 168
           IEVGEQWIVVGVAPGRVNALAT+PRQ LAA Q+G  G  P+FA WLKHTMDKRNG AGNG
Sbjct: 137 IEVGEQWIVVGVAPGRVNALATMPRQTLAAAQAGATGHAPAFATWLKHTMDKRNGAAGNG 196

Query: 169 DRAGNDGSTS 178
           +R G DGSTS
Sbjct: 197 ERPGQDGSTS 206


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 202,018
Number of extensions: 4599
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 99
Effective length of database: 1,245,805
Effective search space: 123334695
Effective search space used: 123334695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)