BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1903.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311359|ref|YP_003775451.1| flagellar hook-filament junctio...   649   0.0  

>gi|300311359|ref|YP_003775451.1| flagellar hook-filament junction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/377 (86%), Positives = 350/377 (92%)

Query: 1   MRISTQMLYQSSNNDMTSMQSQILKLTQQVTAQQKVLLPSDDPVAAARALDMVQTSALND 60
           MRISTQM+YQSSNND+TSMQSQ LKL+QQVTAQQ+VLLPSDDPVAAARALDM QT+ LN+
Sbjct: 1   MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60

Query: 61  QYKTNRQNANSALATVQGTLDSLTNMLTKLKSNVITAGNASYSNAERINMAAEIKGNLNE 120
           QYKTNRQNANSAL++VQG L+S+TNMLTKLKSNVITAGNASYSNAERINMA+EIKGNL E
Sbjct: 61  QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120

Query: 121 VMGYANAQDGQGNYIFAGFKSSTQPFTLDGTGGVVYNGDQGAMTLQVDSTRQMDISASGQ 180
           V+GYANAQDGQGNY+FAGFKS+TQPFTLDGTGGVVYNGDQGAM+LQVDSTR MDISASGQ
Sbjct: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISASGQ 180

Query: 181 AIFQGNGQDIFKTMTNLINVLSVPVTEAANNADTAAANAFVYPAGSGQTPIAAYKTAQAA 240
           AIFQGNGQDIFKTM N INVLSVPVTEAAN AD  AAN FVYPAGSG TPIAAYKT+ A 
Sbjct: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSLAQ 240

Query: 241 LDALKPDDPTYQAQFTATAALKLQSDAADAARTPVVGSQAALSRSLAQFNTQIDSISSSV 300
           L+AL P DPTYQA FTATAALKLQSDAADAARTPVVGSQAAL+R+LA FNTQIDS+ S+V
Sbjct: 241 LNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLLSNV 300

Query: 301 STVKASIGARQNELDNLDAAGLVNNENYTQTINNLLGRNLSDTSELISDLTLKQTYLSAA 360
           +T KASIGARQNELDNLDAAG VN ENYTQTINNLLGRN SD ++LISD TL QTYLSAA
Sbjct: 301 TTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLSAA 360

Query: 361 QKVFVTTSGLTLLNYLK 377
           QKVFVTTSGL+LLNYLK
Sbjct: 361 QKVFVTTSGLSLLNYLK 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.122    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 934,243
Number of extensions: 34598
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 131 (55.1 bits)