BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1902.p
         (777 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311358|ref|YP_003775450.1| flagellar hook-associated FlgK ...  1170   0.0  

>gi|300311358|ref|YP_003775450.1| flagellar hook-associated FlgK
           protein [Herbaspirillum seropedicae SmR1]
          Length = 778

 Score = 1170 bits (3028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/780 (85%), Positives = 722/780 (92%), Gaps = 5/780 (0%)

Query: 1   MATNIFSIGQSALQAAMAAQATTSHNISNATTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60
           MATNIFSIGQSALQAAMAAQATTSHNISN  TPGYNRQEVVQSSAGGINYGYGFVGQGTQ
Sbjct: 1   MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60

Query: 61  VTEIKRVYNDFLTKQALASQTSASSLDSYYAQISQINNMVADTKAGLSPALQDFFASVQN 120
           V EIKRVYNDFL KQALASQTSASSLDSYY++ISQINNMVADTKAGLSPALQDFF++VQN
Sbjct: 61  VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120

Query: 121 LASNPNTQASRQTVLSQASTLVARISAINDQLSQSSASVNSQITSTVTTINSYAQQIAQL 180
           LASNPNTQASRQ+VLSQASTLVARIS+INDQLS SSASVNSQITSTVT+INS+AQQI+QL
Sbjct: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180

Query: 181 NQAIVNAVGTGGGQQPNDLLDQRDQLVSELNKYVKITTVPQDTGAVSVFIGTGQSLVAGD 240
           NQAIV A+GTGGGQ PNDLLDQRDQ++S+LNK VKITTVPQDTG+VSVFIGTGQSLVAGD
Sbjct: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240

Query: 241 QVTQLAVTNSPTDVSRLQVGQVLPGGGTATIPDSFFYDGGSLGGLLRYRTETLDPTQNAL 300
            VTQ+ VTNSPTDVSRLQ+GQ +PGGGT+TIPDSFFYDGGSLGGLL+YR+ETLDPTQNAL
Sbjct: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300

Query: 301 GRITIAMGTAFNQQQQLGLDQNGNPGTNMFNISSPNLIGYPTNTGTTDLKAVITDPSSLS 360
           GRI IAMGTAFNQQQ+LGLDQNGN GT +FN+SSPNLIGYP NTGTT+L   ITDPS+L+
Sbjct: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT 360

Query: 361 TSDYTLTYDGTNYTFTRLSDNTKTVKAAADFPVTLDGVTYSNGAAAPGPFAPSIPSGNIY 420
           TSDYTL+YDGTNYTFTRLSDNTKT+KA   FPVTLDGVTYSNGAAAPGPFAP++ +GN Y
Sbjct: 361 TSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGNTY 420

Query: 421 KIQPTANGAAAFSLALNNTQLLASAAPISTSANATNNVNASMPATNTGNAIISNTALDST 480
           KIQPTANGAA FSLALNNTQLLA+AAPI+TS NATNNVNASMPA+NTGNAIISNT+LDS+
Sbjct: 421 KIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLDSS 480

Query: 481 KFQQGSSVSFTASVSGS---QVQLSAAWTGAAPVPTVTYTNPDGSTGTATGGAAFNYTPG 537
           ++QQGSSVSFTA++  S   ++QLSAAWTGAAPVP VT    DG+T + TG   F+Y  G
Sbjct: 481 QYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFDYKSG 540

Query: 538 MTISSGGVSFTLTGTPGTTAPDKFNFAPVAANKGTATINAGSVTPAYLTTTTPLTKPTTL 597
           MTI+SGGV++ LTG+P   A DKFNFAPV+ANKGTATI+ GSVTPAYLTTTTPLTKPTTL
Sbjct: 541 MTITSGGVTYALTGSPA--AGDKFNFAPVSANKGTATISTGSVTPAYLTTTTPLTKPTTL 598

Query: 598 TFNNTASPPVFNISPAVPAGGGTITHKDGTTTAIAGGASTLSYTAGDTYEISGVKFQISS 657
           T+N+TA+PPVFNISPAVPAGGGTITHKDGTTT IAGGA+TLSYTAGD+YEISGV+F IS 
Sbjct: 599 TYNSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEISGVQFAISG 658

Query: 658 QPANGDQFTIAANTNATSDNRNMLAMANLQTANTINGTSFQGSYSQLVATIGNKTNEINV 717
           QP NGDQFTIAANTNA SDNRN LAM  LQTANTINGTSFQGSYSQLVATIGNKTNEINV
Sbjct: 659 QPGNGDQFTIAANTNAASDNRNALAMGKLQTANTINGTSFQGSYSQLVATIGNKTNEINV 718

Query: 718 TNTAEKTRLTAIQNQQQSDSGVNQDEELAHMIRNQQQYQAAAKIIQAASDMINALLSLGS 777
           TNTAEK RLTAIQNQQQS+SGVNQDEELAHMI+NQQQYQAAAKIIQAASDMIN LLSLGS
Sbjct: 719 TNTAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQAASDMINVLLSLGS 778


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.123    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,899,616
Number of extensions: 67780
Number of successful extensions: 296
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 1
Length of query: 777
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 684
Effective length of database: 1,179,515
Effective search space: 806788260
Effective search space used: 806788260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 134 (56.2 bits)